View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9477_low_11 (Length: 448)
Name: NF9477_low_11
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 72 - 432
Target Start/End: Complemental strand, 4639786 - 4639426
Alignment:
| Q |
72 |
cattttgagtatagtttcacacatatcatatcccagtgacacaaatgtgattacaaatgtctcttacctccctgccacttattaacacttgtttctctct |
171 |
Q |
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| T |
4639786 |
cattttgagtatagtttcacacatatcatatcccagtgacacaaatgtgattacaaatgtctcttacctccctgccacttattaacacttgtttctctct |
4639687 |
T |
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| Q |
172 |
cttttaaataaccctcttgttctttcattttctcttccattaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaacttcaag |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4639686 |
cttttaaataaccctcttgttctttcattttctcttccattaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaacttcaag |
4639587 |
T |
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| Q |
272 |
taatggaaaccaaagatgaacctcaagtaatggaccatttgaccataccaacaacaacaacaactgggaccagtttctcttttctctcttcacaacacac |
371 |
Q |
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| T |
4639586 |
taatggaaaccaaagatgaacctcaagtaatggaccatttgaccataccaacaacaacaacaactgggaccagtttctcttttctctcttcacaacacac |
4639487 |
T |
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| Q |
372 |
ccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaatatt |
432 |
Q |
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| T |
4639486 |
ccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaatatt |
4639426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 110 - 351
Target Start/End: Original strand, 48511429 - 48511666
Alignment:
| Q |
110 |
acacaaatgtgattacaaatgtctcttacc-tccctgccacttattaacactt-gtttctctctcttttaaataaccctcttgttctttcattttctctt |
207 |
Q |
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| T |
48511429 |
acacaaacgtgcttacaaatgtctctcaccctcactgccacttattaacactttgtttttctctcttttaaataaccctcttgttctttcattttctctt |
48511528 |
T |
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| Q |
208 |
ccattaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaacttcaagtaatggaaaccaaagatgaacctcaagtaatggacc |
307 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
48511529 |
ccataaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaactt---gtaatggaaaccaaagatgaacttcaagtaatggacc |
48511625 |
T |
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| Q |
308 |
atttgaccataccaacaacaacaacaactgggaccagtttctct |
351 |
Q |
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| T |
48511626 |
atttgaccatac---caacaacaacatctgggaccagtttctct |
48511666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 48511739 - 48511814
Alignment:
| Q |
347 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccacca |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| |||| |
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| T |
48511739 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtgactatcaaaatgaaattcatgaaacaacca |
48511814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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