View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9477_low_12 (Length: 415)
Name: NF9477_low_12
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 18994659 - 18994321
Alignment:
| Q |
1 |
ttggtgtcaaccctttggttctcatggaaaagggacccctgataatctagagttcgaccgaaaggtaagtaacgtttgatcaaaaattattccacccaat |
100 |
Q |
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| T |
18994659 |
ttggtgtcaaccctttggttctcatgaaaaagggtccccttataatttagagttcgaccgaaagataagtaacgtttgatcaagaattattccacccaat |
18994560 |
T |
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| Q |
101 |
aatttttggagcttattaaccacttaaatttaattgattggtttgatgtttggctaacataataatannnnnnnnnnnnnnnnn-aagagaataattaga |
199 |
Q |
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| T |
18994559 |
aatttttggagcttattaaccacttaaatttaattgattggtttgatgtt-ggctaacataataattttttttagatttttttttaagagaataattata |
18994461 |
T |
|
| Q |
200 |
tttagatacaaagacaatgtttcaaaacatcgacttaattacgaaaatgtcgctacatcacattttccacgcaatttttactccagtctaataagaatag |
299 |
Q |
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| T |
18994460 |
tttagatacaaagacaatgtttcaaaacatcgacttaattacgaaaatgttgctacatcacattttccacgcaattcttactccaatctaataagaatag |
18994361 |
T |
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| Q |
300 |
gagtcttttaatcctcattttgcattaccatcggtgtatg |
339 |
Q |
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| T |
18994360 |
gagtcttttaatcctcattttgcattacaatcggtgtatg |
18994321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 400
Target Start/End: Complemental strand, 18994299 - 18994248
Alignment:
| Q |
349 |
tcaagaaatctagtaattagaatttactttaaaagttaataagtgtgatgtc |
400 |
Q |
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| T |
18994299 |
tcaagtaatctagtaattagaatttactttaaaagttaataagtgtgatgtc |
18994248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 16722377 - 16722422
Alignment:
| Q |
50 |
gagttcgaccgaaaggtaagtaacgtttgatcaaaaattattccac |
95 |
Q |
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| T |
16722377 |
gagttcgaccgaaatgtaagtaaaatttgaccaaaaattattccac |
16722422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 35383298 - 35383242
Alignment:
| Q |
43 |
taatctagagttcgaccgaaaggtaagtaacgtttgatcaaaaattattccacccaa |
99 |
Q |
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| T |
35383298 |
taatcaagagttcgaccaaaaggtaagtaaagtctgataaaaaattgttccatccaa |
35383242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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