View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9477_low_13 (Length: 359)
Name: NF9477_low_13
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 40042644 - 40042975
Alignment:
| Q |
18 |
ctaacaaacactcgaaaacaatgctaaatgtaagaactttcgtcgagcggtagagactaatctcttcttgaccttgccagtttttagataaatacaattt |
117 |
Q |
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| T |
40042644 |
ctaacaaacactcgaaaacaatgctaaatgtaagaactttcgtcgagcggtagagactaatctcttcttgaccttgccagtttttagataaatacaattt |
40042743 |
T |
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| Q |
118 |
aacaaagttgcataactttggaactaatgtttctagtccagcatagccaaaactagtgccgataacgcctcgtaggaagcggtgtctttcgccgtctttc |
217 |
Q |
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| T |
40042744 |
aacaaagttgcataactttggaactaatgtttctagtccagcatagccaaaactagtgccgataacgcctcgtaggaagcggtgtctttcgccgtctttc |
40042843 |
T |
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| Q |
218 |
tccatgatagagtcctttcccatgagatgaactgaggaagaaggccaagagctttttaccagcttgaactcattggacaaaataaacttatttgcctcag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40042844 |
tccatgatagagtcctttcccatgagatgaactgaggaagaaggccaagagctttttaccagcttgaactcattggacaaaataaacttatttgcctcag |
40042943 |
T |
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| Q |
318 |
ctccatttactatcacagttggtgaccctatg |
349 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40042944 |
ctccatttactatcacagttggtgaccctatg |
40042975 |
T |
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