View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9477_low_16 (Length: 357)
Name: NF9477_low_16
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 2451911 - 2451585
Alignment:
| Q |
8 |
ttcgtgtttggcatagatatccatactagtttaacatatgaggaaagtagtagcatgcatagacaattaaagcatggtaaacatctaagagatattatca |
107 |
Q |
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| T |
2451911 |
ttcgtgtttggcatagatatccataatagtttaacatatgaggaaagtagtagcatgcatagacaattaacgcatggtaaacatctaagggatattatca |
2451812 |
T |
|
| Q |
108 |
agtggctaattggtatgttagtgttattctct-tttgccaggacttgaaacttggacatttaaactccttaaccgttaacttaaaagctgagccacctaa |
206 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2451811 |
agtggctaattggtatgttagtgttattctctctttgccaggacttgaaacttggacatttaaactccttaaccgttaacttaaaagctgagccacctaa |
2451712 |
T |
|
| Q |
207 |
cctccctattcatttgcacatttgatccatttatacgaattcaagtatgactcacttatatggtgcatggtaaatatgtttaaacctaattcttcaaaag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2451711 |
cctccctattcatttgcacatttgatccatttatacgaattcaagtatgactcacttatatggtgcatggtaaatatgtttaaacctaattcttcaaaag |
2451612 |
T |
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| Q |
307 |
gccactcttaatgcaatcccgacatga |
333 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2451611 |
gccactcttaatgcaatcccgacatga |
2451585 |
T |
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