View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9477_low_17 (Length: 355)

Name: NF9477_low_17
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9477_low_17
NF9477_low_17
[»] chr8 (6 HSPs)
chr8 (1-338)||(2273777-2274112)
chr8 (5-114)||(10248296-10248406)
chr8 (4-116)||(17656465-17656578)
chr8 (48-116)||(43312412-43312480)
chr8 (5-110)||(8862352-8862458)
chr8 (5-110)||(22325826-22325931)
[»] chr1 (9 HSPs)
chr1 (4-115)||(34775112-34775224)
chr1 (4-89)||(46768442-46768528)
chr1 (4-116)||(32882606-32882719)
chr1 (8-110)||(10785194-10785297)
chr1 (4-107)||(31290750-31290852)
chr1 (1-109)||(32863272-32863381)
chr1 (4-116)||(11439749-11439860)
chr1 (4-84)||(6582980-6583061)
chr1 (21-86)||(46603632-46603697)
[»] chr2 (14 HSPs)
chr2 (4-115)||(4974985-4975097)
chr2 (4-115)||(4992893-4993005)
chr2 (48-110)||(12343063-12343125)
chr2 (5-108)||(7696209-7696312)
chr2 (1-108)||(10173305-10173413)
chr2 (64-114)||(41113527-41113577)
chr2 (20-110)||(34230448-34230538)
chr2 (35-88)||(16952143-16952196)
chr2 (35-88)||(17022808-17022861)
chr2 (35-88)||(17060114-17060167)
chr2 (48-89)||(27879926-27879967)
chr2 (52-88)||(387442-387478)
chr2 (54-86)||(22884931-22884963)
chr2 (48-88)||(37770422-37770462)
[»] chr5 (11 HSPs)
chr5 (10-116)||(21398054-21398161)
chr5 (4-88)||(30097600-30097685)
chr5 (5-116)||(26045693-26045805)
chr5 (20-116)||(14302188-14302285)
chr5 (1-106)||(8297721-8297826)
chr5 (1-114)||(13953974-13954088)
chr5 (5-88)||(7195031-7195114)
chr5 (35-110)||(33109957-33110033)
chr5 (33-110)||(10174926-10175004)
chr5 (4-81)||(26405277-26405354)
chr5 (36-103)||(7682806-7682874)
[»] chr3 (6 HSPs)
chr3 (35-116)||(37123621-37123703)
chr3 (4-109)||(50518818-50518922)
chr3 (48-89)||(32010028-32010069)
chr3 (54-88)||(43012643-43012677)
chr3 (4-92)||(14194194-14194282)
chr3 (49-110)||(46358181-46358242)
[»] chr4 (11 HSPs)
chr4 (2-116)||(53823149-53823261)
chr4 (5-105)||(49747778-49747879)
chr4 (1-110)||(38636959-38637069)
chr4 (5-116)||(16832750-16832861)
chr4 (4-110)||(19311095-19311201)
chr4 (48-110)||(22810934-22810996)
chr4 (38-110)||(48098581-48098651)
chr4 (11-110)||(52009085-52009184)
chr4 (4-110)||(41117697-41117803)
chr4 (27-110)||(25753419-25753503)
chr4 (48-116)||(39420809-39420877)
[»] scaffold0050 (1 HSPs)
scaffold0050 (4-110)||(36953-37059)
[»] scaffold1384 (1 HSPs)
scaffold1384 (5-116)||(1382-1497)
[»] chr7 (7 HSPs)
chr7 (4-87)||(24324527-24324610)
chr7 (1-81)||(6492856-6492937)
chr7 (26-86)||(22567880-22567941)
chr7 (26-86)||(28534279-28534340)
chr7 (48-109)||(1321041-1321103)
chr7 (33-88)||(23983472-23983528)
chr7 (65-109)||(43235601-43235645)
[»] chr6 (1 HSPs)
chr6 (2-87)||(15120329-15120415)
[»] scaffold0063 (1 HSPs)
scaffold0063 (51-115)||(58369-58433)
[»] scaffold0200 (1 HSPs)
scaffold0200 (48-110)||(19624-19686)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 2273777 - 2274112
Alignment:
Q  1 cctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaa 100  Q
    |||||||||||||||||||||||||| ||   | |||||||| |||||||||||| ||||||     ||||||||||||||||||||||||||| |||||    
T  2273777 cctgaaaataaacaccctaaaaaatatcctggatgacaacacccaccaaatacacgtcacca-----aacagactccttcacgaaaacgccaaccgtaaa 2273871  T
Q  101 aacgatatcccacacccaccaaatgcaagaaattgaatgtatnnnnnnnnn---ttgacctgaactccttgttggcataatgtgtaggcaagagcataag 197  Q
    ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||| ||||||||||||||||||||||    
T  2273872 aacgatatcccacacccaccaaatgcaagaaattgaatgtataaaaaaaaaaaattgacctgaactccttgttggcacaatgtgtaggcaagagcataag 2273971  T
Q  198 caactttggtgagttttcctctgagtaataattgagttgttccttttggaatgctgttaataacagctgcaacagcaaggctactaccatctacaacctt 297  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2273972 caactttggtgagttttcctctgagtaatacttgagttgttccttttggaatgctgttaataacagctgcaacagcaaggctactaccatctacaacctt 2274071  T
Q  298 aacattaagctttggatgcctactaacatataagcctccat 338  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2274072 aacattaagctttggatgcctactaacatataagcctccat 2274112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 10248296 - 10248406
Alignment:
Q  5 aaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 103  Q
    |||| ||||||| ||||||| |||| | |||||||||| | ||||| ||||| |||||| |||||||| ||||||||||||||||| | |||||||||||    
T  10248296 aaaaaaaacaccttaaaaaacacccttgaggacaacacccgccaaaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaac 10248395  T
Q  104 gatatcccaca 114  Q
    || ||||||||    
T  10248396 gacatcccaca 10248406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 17656465 - 17656578
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacg-aaaacgccaactgtaaaa 101  Q
    |||||| |||||||||||||  |||| | |||||||||| ||||||| | ||| ||||||||||||||||||||||||| | |||||| | |||| ||||    
T  17656465 gaaaattaacaccctaaaaac-acccttgaggacaacacccaccaaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaa 17656563  T
Q  102 acgatatcccacacc 116  Q
    ||||||||| |||||    
T  17656564 acgatatccaacacc 17656578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 43312412 - 43312480
Alignment:
Q  48 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 116  Q
    |||||||  |||||| ||||| ||||||||| ||| |||||| | ||||||||||||||||||||||||    
T  43312412 aaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgatatcccacacc 43312480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 8862352 - 8862458
Alignment:
Q  5 aaaataaacaccctaaaaaatacccctaaggacaacactcac-caaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 103  Q
    |||||||||||| ||||||| ||||| ||||||||||| |||  |||||||| |||||| ||||||| ||||| | ||||| |||  | | |||||||||    
T  8862352 aaaataaacaccataaaaaacaccccgaaggacaacacccacaaaaatacacgtcaccacctaaaactgactcttacacgagaacaaccattgtaaaaac 8862451  T
Q  104 gatatcc 110  Q
     ||||||    
T  8862452 aatatcc 8862458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 22325826 - 22325931
Alignment:
Q  5 aaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 103  Q
    |||||||||| ||||||||  |||| ||| ||| |||| ||||||| || |  ||||||| ||||||||||||||| || |||||| | | |||||||||    
T  22325826 aaaataaacatcctaaaaac-acccataatgacgacacccaccaaaatataggtcaccatataaaacagactccttaacaaaaacgaccattgtaaaaac 22325924  T
Q  104 gatatcc 110  Q
    |||||||    
T  22325925 gatatcc 22325931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 34775224 - 34775112
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaa 102  Q
    ||||||||||||| |||||||||||  | |||||||||| ||||||| ||||| ||| || |||||||||||||||||||||||||| ||||||||||||    
T  34775224 gaaaataaacaccttaaaaaataccaatgaggacaacacccaccaaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaaaaa 34775125  T
Q  103 cgatatcccacac 115  Q
    ||| |||||||||    
T  34775124 cgaaatcccacac 34775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 46768528 - 46768442
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcaccatctaaaacagactccttcacgaaaacg 89  Q
    ||||||||||||||||||||| |||||  |||||||||| |||| |||| ||| |||||| ||||||||||||||||||||||||||    
T  46768528 gaaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaacg 46768442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 32882719 - 32882606
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaa 102  Q
    ||||||||||||||||||| | |||||  |||||||||| ||||||| || ||||||||  ||||||| ||||||||||||||||||   |||||||| |    
T  32882719 gaaaataaacaccctaaaagacacccccgaggacaacacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaaca 32882620  T
Q  103 cgatatcccacacc 116  Q
    |||||||| |||||    
T  32882619 cgatatccaacacc 32882606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 10785194 - 10785297
Alignment:
Q  8 ataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgat 106  Q
    ||||||||| ||||||| |||| | |||||||||| || |||| ||||  | | ||  ||||||||||||||||||||||||| || ||| |||||||||    
T  10785194 ataaacaccttaaaaaacacccttgaggacaacacccatcaaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgat 10785293  T
Q  107 atcc 110  Q
    ||||    
T  10785294 atcc 10785297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 31290750 - 31290852
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 103  Q
    ||||||||||||| ||||||  |||||| |||||||  | |  || ||||||||||||| ||||| ||||||||||| |||||||| | ||||||||||     
T  31290750 gaaaataaacaccataaaaac-acccctgaggacaattcccttcatatacacatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaat 31290848  T
Q  104 gata 107  Q
    ||||    
T  31290849 gata 31290852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 32863272 - 32863381
Alignment:
Q  1 cctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaa-atacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaa 99  Q
    ||||||||||||||||   ||||| ||||   |||||||||| |||||| |||||| |||||  |||||||||| |||| |||||||||| | | |||||    
T  32863272 cctgaaaataaacaccaagaaaaacacccaagaggacaacacccaccaacatacacgtcaccgcctaaaacagaatcctccacgaaaacgaccattgtaa 32863371  T
Q  100 aaacgatatc 109  Q
    | ||||||||    
T  32863372 acacgatatc 32863381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 11439749 - 11439860
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaa 102  Q
    |||||||||||||||||||  | ||||| | |||||||  ||||||| ||||| |||||| ||||||||||  ||||||||||| |  | || |||||||    
T  11439749 gaaaataaacaccctaaaa--tccccctgaagacaacatccaccaaaatacacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgtaaaaa 11439846  T
Q  103 cgatatcccacacc 116  Q
     ||||||| |||||    
T  11439847 tgatatccaacacc 11439860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 6582980 - 6583061
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacga 84  Q
    ||||||||||||| ||||||| || | | | || ||||| ||||||| ||||| |||||| ||||||||||||||| |||||    
T  6582980 gaaaataaacaccataaaaaacactcatgatgataacacccaccaaaatacacgtcaccacctaaaacagactcctacacga 6583061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 46603697 - 46603632
Alignment:
Q  21 aaaatacccctaaggacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaa 86  Q
    |||| |||||| | |||||||| |||||||   | |||||||||||||||||||| ||||||||||    
T  46603697 aaaagacccctgaagacaacacccaccaaaataaaatcaccatctaaaacagacttcttcacgaaa 46603632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 4975097 - 4974985
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaat-acacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaa 102  Q
    ||||||||||||||| ||||| | || | |||| ||||| |||||||| ||||| ||||| |||||||||||| ||||||||||||| | ||||||||||    
T  4975097 gaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaa 4974998  T
Q  103 cgatatcccacac 115  Q
    |||||||||||||    
T  4974997 cgatatcccacac 4974985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 4993005 - 4992893
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaat-acacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaa 102  Q
    ||||||||||||||| ||||| | || | |||| ||||| |||||||| ||||| ||||| |||||||||||| ||||||||||||| | ||||||||||    
T  4993005 gaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaa 4992906  T
Q  103 cgatatcccacac 115  Q
    |||||||||||||    
T  4992905 cgatatcccacac 4992893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 12343125 - 12343063
Alignment:
Q  48 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 110  Q
    |||||||| |||||| |||||||||||||||||||||||||| |  |||||||||||||||||    
T  12343125 aaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatcc 12343063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 7696312 - 7696209
Alignment:
Q  5 aaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 103  Q
    |||||||||||| ||||||  |||||  |||||||||| ||||||| |||||||||||| |||||| | ||||||||||||||||| | | ||||||||     
T  7696312 aaaataaacaccttaaaaac-acccccgaggacaacacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaat 7696214  T
Q  104 gatat 108  Q
    |||||    
T  7696213 gatat 7696209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 10173305 - 10173413
Alignment:
Q  1 cctgaaaataaacaccctaaaaaatacccctaaggacaacactca-ccaaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaa 99  Q
    |||||||||||||||||||||| ||||| || ||||||| || || | |||||||  ||||   |||||||||||  ||||| ||||||| | |||||||    
T  10173305 cctgaaaataaacaccctaaaagatacctctgaggacaatacccatcaaaatacatgtcacggcctaaaacagacgtcttcatgaaaacgactactgtaa 10173404  T
Q  100 aaacgatat 108  Q
    |||||||||    
T  10173405 aaacgatat 10173413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 41113527 - 41113577
Alignment:
Q  64 ctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccaca 114  Q
    |||||||||||||||||||||||||| | | |||| |||||||||||||||    
T  41113527 ctaaaacagactccttcacgaaaacgactattgtacaaacgatatcccaca 41113577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 34230538 - 34230448
Alignment:
Q  20 aaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 110  Q
    ||||| |||||| || ||||||  ||||||| ||||| |||||||||||| ||||||| | |||||||||| | ||| ||||||||||||||    
T  34230538 aaaaacaccccttagaacaacatccaccaaaatacacgtcaccatctaaa-cagactcttccacgaaaacgaccactataaaaacgatatcc 34230448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 16952143 - 16952196
Alignment:
Q  35 gacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaac 88  Q
    |||||||| ||| ||||| |||||||||  |||||||||| |||||||||||||    
T  16952143 gacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaac 16952196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 17022808 - 17022861
Alignment:
Q  35 gacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaac 88  Q
    |||||||| ||| ||||| |||||||||  |||||||||| |||||||||||||    
T  17022808 gacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaac 17022861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 17060114 - 17060167
Alignment:
Q  35 gacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaac 88  Q
    |||||||| ||| ||||| |||||||||  |||||||||| |||||||||||||    
T  17060114 gacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaac 17060167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 27879926 - 27879967
Alignment:
Q  48 aaatacacatcaccatctaaaacagactccttcacgaaaacg 89  Q
    ||||| ||||||||| |||||||||||||||||| |||||||    
T  27879926 aaataaacatcaccacctaaaacagactccttcaggaaaacg 27879967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 387478 - 387442
Alignment:
Q  52 acacatcaccatctaaaacagactccttcacgaaaac 88  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  387478 acacatcaccacctaaaacagactccttcacaaaaac 387442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 22884931 - 22884963
Alignment:
Q  54 acatcaccatctaaaacagactccttcacgaaa 86  Q
    ||||||||| |||||||||||||||||||||||    
T  22884931 acatcaccacctaaaacagactccttcacgaaa 22884963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 37770422 - 37770462
Alignment:
Q  48 aaatacacatcaccatctaaaacagactccttcacgaaaac 88  Q
    |||| ||| |||||| |||||||||||||||||||||||||    
T  37770422 aaatccacgtcaccacctaaaacagactccttcacgaaaac 37770462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 21398054 - 21398161
Alignment:
Q  10 aaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatat 108  Q
    ||||||| ||||||| |||||| ||||||||||| || ||| ||||| |||||||||||||||||| |||||||||||||  |   ||||||||||||||    
T  21398054 aaacaccttaaaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatat 21398153  T
Q  109 cccacacc 116  Q
    ||| ||||    
T  21398154 cccgcacc 21398161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 30097685 - 30097600
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaac 88  Q
    ||||||||||||||||||||| | || | | |||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||    
T  30097685 gaaaataaacaccctaaaaaacatccatgatgacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 30097600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 26045693 - 26045805
Alignment:
Q  5 aaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 103  Q
    ||||||||||||||||||||  ||||| |||||||||| |||| |||| ||| |||||| |||||||||||| ||||| ||||| | | || ||||||||    
T  26045693 aaaataaacaccctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaac 26045792  T
Q  104 gatatcccacacc 116  Q
    || |||| |||||    
T  26045793 gaaatccaacacc 26045805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 14302188 - 14302285
Alignment:
Q  20 aaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 116  Q
    ||||| |||||| | |||||||| ||||||| ||||| |||||| |||||||||| |||||| |||||||| | | |||||||||||||||| |||||    
T  14302188 aaaaacacccctgatgacaacacccaccaaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacacc 14302285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 8297826 - 8297721
Alignment:
Q  1 cctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaa 99  Q
    |||||||||| ||||||||||||  |||||| |||| ||||  ||||||| |||||||||||| |||||||| ||||||||| ||||| | | | |||||    
T  8297826 cctgaaaatacacaccctaaaaac-acccctgaggataacatccaccaaaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaa 8297728  T
Q  100 aaacgat 106  Q
    |||||||    
T  8297727 aaacgat 8297721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13953974 - 13954088
Alignment:
Q  1 cctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaa 99  Q
    |||||||||||||||| |||||||||||| | |||||||| | |||| |||||||  ||| |  ||||||||||||  |||| ||| ||| | |||||||    
T  13953974 cctgaaaataaacaccttaaaaaatacccttgaggacaactcccaccaaaatacatgtcatctcctaaaacagactttttcatgaagacgactactgtaa 13954073  T
Q  100 aaacgatatcccaca 114  Q
    |||| ||||||||||    
T  13954074 aaacaatatcccaca 13954088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 7195031 - 7195114
Alignment:
Q  5 aaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaac 88  Q
    |||||||||||||||||||  ||| ||  ||||||||| ||||||| ||||| |||||| ||||||||||||||||||| |||||    
T  7195031 aaaataaacaccctaaaaac-accgctgcggacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacaaaaac 7195114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 33109957 - 33110033
Alignment:
Q  35 gacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 110  Q
    |||||||| ||||||| ||||| ||| || |||||||| || |||||||||||||| | ||||||||||||||||||    
T  33109957 gacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatcc 33110033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 10175004 - 10174926
Alignment:
Q  33 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 110  Q
    |||||||||| ||||||| ||||| | |||| |||||||||||||||||   |||||| | || |||||||||||||||    
T  10175004 aggacaacacccaccaaagtacacgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacgatatcc 10174926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 26405277 - 26405354
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttca 81  Q
    ||||||||||||| ||||||  |||||| |||||||||  ||||||| ||||| |||||| |||||||||||| |||||    
T  26405277 gaaaataaacaccttaaaaac-acccctgaggacaacaaccaccaaaatacacgtcaccacctaaaacagacttcttca 26405354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 7682874 - 7682806
Alignment:
Q  36 acaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 103  Q
    ||||||| ||||||| |||||||||||| |||||| |||||| ||||| |||||| | || ||||||||    
T  7682874 acaacacccaccaaaatacacatcaccacctaaaatagactctttcacaaaaacgaccaccgtaaaaac 7682806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 37123703 - 37123621
Alignment:
Q  35 gacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 116  Q
    |||||||| ||||||| ||||||||||||| ||||| ||||| ||||||||||||| | |||||||||||||||||| |||||    
T  37123703 gacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacc 37123621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 50518818 - 50518922
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaa 102  Q
    ||||||||||||||||||||  |||| | ||||| |||| || |||| ||||| |||||||||||||||||||||||||||| | | || ||||||||||    
T  50518818 gaaaataaacaccctaaaaac-acccatgaggaccacacccaacaaaatacacctcaccatctaaaacagactccttcacgataccacc-actgtaaaaa 50518915  T
Q  103 cgatatc 109  Q
    |||||||    
T  50518916 cgatatc 50518922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 32010069 - 32010028
Alignment:
Q  48 aaatacacatcaccatctaaaacagactccttcacgaaaacg 89  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  32010069 aaataaacatcaccacctaaaacagactccttcacgaaaacg 32010028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 43012677 - 43012643
Alignment:
Q  54 acatcaccatctaaaacagactccttcacgaaaac 88  Q
    ||||||||||||||||||||||||||||| |||||    
T  43012677 acatcaccatctaaaacagactccttcacaaaaac 43012643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 14194282 - 14194194
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgcca 92  Q
    ||||||||||| ||||||||  || | | ||||| |||| ||||||| ||||| |||||| |||||||||||||| |||||||| |||||    
T  14194282 gaaaataaacatcctaaaaac-actcatgaggaccacacccaccaaaatacacgtcaccacctaaaacagactccatcacgaaatcgcca 14194194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 46358181 - 46358242
Alignment:
Q  49 aatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 110  Q
    |||| |||||| || |||||||||||||||||||||||||| ||  || |||||||| ||||    
T  46358181 aataaacatcatcacctaaaacagactccttcacgaaaacgacatatgaaaaaacgaaatcc 46358242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 53823149 - 53823261
Alignment:
Q  2 ctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaa 100  Q
    |||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||| ||| || |   ||||||||||||||| |||| | | ||  ||||    
T  53823149 ctgaaaataaacaccctaaaaaatacccctgaggataacacccaccaaaatacacgtcatcacc---aacagactccttcacaaaaatgtccaccataaa 53823245  T
Q  101 aacgatatcccacacc 116  Q
    ||||||||||||||||    
T  53823246 aacgatatcccacacc 53823261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 49747879 - 49747778
Alignment:
Q  5 aaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 103  Q
    |||||||||||| ||||||| ||| || |||||||||| ||||||| | ||  |||||| ||||||||||||| |||||||||||| | | |||||||||    
T  49747879 aaaataaacaccataaaaaacacctctgaggacaacacccaccaaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaac 49747780  T
Q  104 ga 105  Q
    ||    
T  49747779 ga 49747778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 38636959 - 38637069
Alignment:
Q  1 cctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaa 99  Q
    |||||||||||||||| |||| || |||||  |||||||||| ||| ||| ||||  |||||| |||||||| ||||||||||||||||  |  ||||||    
T  38636959 cctgaaaataaacaccttaaataaaacccccgaggacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaa 38637058  T
Q  100 aaacgatatcc 110  Q
    ||| |||||||    
T  38637059 aaatgatatcc 38637069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 16832750 - 16832861
Alignment:
Q  5 aaaataaacaccctaaaaaatacccctaaggacaacactcaccaaatacacatcaccatctaaaacagactccttcacg-aaaacgccaactgtaaaaac 103  Q
    ||||||||||||||||||| | | ||| |||||||||| ||||||||| || |||||| |||||||| | |||| |||| |||||| |  |||||||||     
T  16832750 aaaataaacaccctaaaaact-ctcctgaggacaacacccaccaaataaacgtcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaa 16832848  T
Q  104 gatatcccacacc 116  Q
    ||||||| |||||    
T  16832849 gatatccaacacc 16832861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 19311095 - 19311201
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaa 102  Q
    |||| ||||||||||||||| | |||||  ||| ||||| ||||||| ||||| |||||| |  ||||||| |||||||||||||||   ||||||||||    
T  19311095 gaaattaaacaccctaaaaact-cccctggggataacacccaccaaaatacacgtcaccaccataaacagattccttcacgaaaacgagcactgtaaaaa 19311193  T
Q  103 cgatatcc 110  Q
    ||||||||    
T  19311194 cgatatcc 19311201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 22810934 - 22810996
Alignment:
Q  48 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 110  Q
    |||||||| |||||  |||||||||||| |||||||||| || | ||||||||||||||||||    
T  22810934 aaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcc 22810996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 48098651 - 48098581
Alignment:
Q  38 aacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 110  Q
    ||||| |||||||||||| |||||| ||||||||  ||| ||||| |||||| | ||||||||||||||||||    
T  48098651 aacacccaccaaatacacgtcaccacctaaaaca--ctctttcacaaaaacgaccactgtaaaaacgatatcc 48098581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 52009184 - 52009085
Alignment:
Q  11 aacaccctaaaaaatacccctaaggacaacactcaccaaata-cacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatc 109  Q
    |||||||||||||| |||||| |||||||| | ||||||| | |||  ||||| |||||||||||||| ||| | || || | |||||||||||||||||    
T  52009184 aacaccctaaaaaacacccctgaggacaaccc-caccaaaaatcacgccaccacctaaaacagactccgtcatggaagcgaccactgtaaaaacgatatc 52009086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 41117697 - 41117803
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaa 102  Q
    |||||||||||||||||| || | || | |||||||||| |||| ||||||| ||||||| ||| ||||||||| | |||||||||  |   ||||||||    
T  41117697 gaaaataaacaccctaaataaca-ccatgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaaaa 41117795  T
Q  103 cgatatcc 110  Q
    ||||||||    
T  41117796 cgatatcc 41117803  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 25753503 - 25753419
Alignment:
Q  27 cccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 110  Q
    ||||| |||||||||| ||||||| ||||  ||| || |||||||| ||||||||||||||| | | ||||||||| || |||||    
T  25753503 cccctgaggacaacacccaccaaaatacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatcc 25753419  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 39420809 - 39420877
Alignment:
Q  48 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 116  Q
    |||||||| |||||||||||||| ||||||| ||||| |||  | || ||| ||||||||||| |||||    
T  39420809 aaatacacgtcaccatctaaaactgactcctacacgagaacaaccaccgtataaacgatatccaacacc 39420877  T

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Target: scaffold0050 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 37059 - 36953
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaa 102  Q
    ||||||||||||| ||||||| |||| | ||||| |||| || |||| ||||| |||||| ||||||||||||||||||||||| | || ||||||||||    
T  37059 gaaaataaacaccataaaaaacacccatgaggaccacacccaacaaaatacacgtcaccacctaaaacagactccttcacgaaaccacc-actgtaaaaa 36961  T
Q  103 cgatatcc 110  Q
    ||| ||||    
T  36960 cgacatcc 36953  T

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Target: scaffold1384 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 1382 - 1497
Alignment:
Q  5 aaaataaacaccctaaaaaatacccctaaggacaaca---ctcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaa 100  Q
    |||||||||||| ||||||| ||||||||||||||||   | ||| ||| ||||| |||||| ||||||| ||||||| ||||| |||  | ||||||||    
T  1382 aaaataaacaccataaaaaacacccctaaggacaacaaaacccacaaaaatacacgtcaccacctaaaactgactcctacacgagaacaaccactgtaaa 1481  T
Q  101 aacgatatcccacacc 116  Q
    |||||||||| |||||    
T  1482 aacgatatccaacacc 1497  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 24324527 - 24324610
Alignment:
Q  4 gaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaa 87  Q
    |||||||||||| |||||||  |||| | |||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||    
T  24324527 gaaaataaacactctaaaaac-acccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaa 24324610  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6492856 - 6492937
Alignment:
Q  1 cctgaaaataaacaccctaaaaaatacccctaaggacaacactcacc-aaatacacatcaccatctaaaacagactccttca 81  Q
    |||||||||||||||| ||||||| |||  | |||||||||  |||| |||| ||| |||||| ||||||||||||||||||    
T  6492856 cctgaaaataaacaccataaaaaacacctatgaggacaacatccaccaaaattcacgtcaccacctaaaacagactccttca 6492937  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 22567880 - 22567941
Alignment:
Q  26 acccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaa 86  Q
    ||||||| ||||||||  ||||||| |||||||||||| ||||||||||||| |||||||||    
T  22567880 acccctagggacaacatccaccaaaatacacatcaccacctaaaacagactctttcacgaaa 22567941  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 28534279 - 28534340
Alignment:
Q  26 acccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaa 86  Q
    |||||| |||||||||| ||||||| || ||||||||| ||||||||||||| |||||||||    
T  28534279 acccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttcacgaaa 28534340  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 1321103 - 1321041
Alignment:
Q  48 aaatacacatcaccatctaaaacagactcc-ttcacgaaaacgccaactgtaaaaacgatatc 109  Q
    ||||||||||||||| ||||||||||| || ||||||||| |  | |||||||||||||||||    
T  1321103 aaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatc 1321041  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 23983528 - 23983472
Alignment:
Q  33 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaac 88  Q
    |||||||||| ||||||| || ||| ||||| ||||||||||||| |||||||||||    
T  23983528 aggacaacacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaac 23983472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 43235645 - 43235601
Alignment:
Q  65 taaaacagactccttcacgaaaacgccaactgtaaaaacgatatc 109  Q
    |||||||||||| |||||||||||| | || ||||||||||||||    
T  43235645 taaaacagactcattcacgaaaacggccaccgtaaaaacgatatc 43235601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 15120329 - 15120415
Alignment:
Q  2 ctgaaaataaacaccctaaaaaatacccctaaggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaa 87  Q
    |||| |||||||||||||||||| | || | |||||||||  ||||||| |||||||||||| ||||||||||||| ||||| ||||    
T  15120329 ctgacaataaacaccctaaaaaacatccatgaggacaacatccaccaaaatacacatcaccacctaaaacagactcattcacaaaaa 15120415  T

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Target: scaffold0063 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 58433 - 58369
Alignment:
Q  51 tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacac 115  Q
    |||||||||||| | |||||||||||||||||||||||| | | |||||||  ||||||| ||||    
T  58433 tacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacac 58369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 19686 - 19624
Alignment:
Q  48 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 110  Q
    ||||||||||||||| |||||||| |||||||| | |||||| |  || ||||||||||||||    
T  19686 aaatacacatcaccacctaaaacaaactccttctcaaaaacgacctctataaaaacgatatcc 19624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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