View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9477_low_21 (Length: 274)
Name: NF9477_low_21
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 35443481 - 35443240
Alignment:
| Q |
18 |
aggagcaacttggtatctaaacaacaagcttcttttcctgggttgacctcttcaggtggaactaggaggcctttatcatcagggaatccaggatcaagac |
117 |
Q |
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| T |
35443481 |
aggagcaacttggtatctaaacaacaagcttcttttcctgggttgacctcttcaggtggaaccaggaggcctttatcatcagggaatccaggatcaagac |
35443382 |
T |
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| Q |
118 |
ctgcaactcccacgggacggcctacattgtccacatcttcaaaatcatcgagaccttcaacacctacttctcgtacatccatagcttcagccaggacaat |
217 |
Q |
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| T |
35443381 |
ctgcaactcccacgggacggcctacattgtccacatcttcaaaatcatctagaccttcaacacctacttctcgtacatccatagcttcagccaggacaat |
35443282 |
T |
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| Q |
218 |
ggtaaccacacctacttctcgtacttccataccttcatccag |
259 |
Q |
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| T |
35443281 |
ggtaaccacacctacttctcgtacttccataccttcatccag |
35443240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 35443274 - 35443197
Alignment:
| Q |
177 |
acacctacttctcgtacatccatagcttcagccaggacaatggtaaccacacctacttctcgtacttccataccttca |
254 |
Q |
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| T |
35443274 |
acacctacttctcgtacttccataccttcatccaggacaatggtaaccacccctccttctcgtacatccataccttca |
35443197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 31510141 - 31510077
Alignment:
| Q |
121 |
caactcccacgggacggcctacattgtccacatcttcaaaatcatcgagaccttcaacacctact |
185 |
Q |
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| T |
31510141 |
caactcctaccggacgcccttcattgaccacagcttcaaaaccatcaagatcttcaacacctact |
31510077 |
T |
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