View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9477_low_26 (Length: 249)
Name: NF9477_low_26
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3303435 - 3303194
Alignment:
| Q |
1 |
ttgtgttcagtgttctcaaaaacttgtgttatgtgactcattgacagtgttgtcaaaaacttatgttatgtgactcatttactcatcatcagttgtatgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3303435 |
ttgtgttcagtgttctcaaaaacttgtgttatgtgactcattggcagtgttgtcaaaaacttatgttatgtgactcatttactcatcatgagttgtatgt |
3303336 |
T |
|
| Q |
101 |
gaccttgtgaatatgatttagaggtcattttgcttatctatgttattacttattttctatcaggcatgtgcgtgagtgtttaaggtaacattttgaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303335 |
gaccttgtgaatatgatttagaggtcattttgcttatctatgttattacttattttctatcaggcatgtgcgtgagtgtttaaggtaacattttgaattt |
3303236 |
T |
|
| Q |
201 |
taagaaggaacttagaatctgtgccacaatcctagtattatc |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3303235 |
taagaaggaacttagaatctgtgccacaatcctattattatc |
3303194 |
T |
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