View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9477_low_27 (Length: 244)
Name: NF9477_low_27
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_low_27 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 12449103 - 12448847
Alignment:
| Q |
3 |
gataatactacaagacaatcctaaaacaaatgtatggaaagattctcaagaaaggtgatattttcaagttgctgaaattcaagatccctattgataccaa |
102 |
Q |
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| T |
12449103 |
gataatactacaagacaatcctaaaacaaatgtgtggaaagattctcaagaaagttgatattttcaagtggctgaaattcaagatccctattgataccaa |
12449004 |
T |
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| Q |
103 |
cattctatagaatatgaaaatttacaaactctatggaaatgctgaaattagcatgctaatatacaattct---------------aatatggataatttt |
187 |
Q |
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| T |
12449003 |
cattctatagaatatgaaaatttacaaactctatggaaatgctgaaattagcaagctaatatacaattctattgcattcacgtcaaatatggataatttt |
12448904 |
T |
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| Q |
188 |
gattgtccaacttaaactcaaatgttttcaaatacaccaaaccaaagtaagaatcgt |
244 |
Q |
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| T |
12448903 |
gattgtccaacttaaagttaaattttttcaaatacaccgaaccaaagtaagaatcgt |
12448847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 12451365 - 12451253
Alignment:
| Q |
3 |
gataatactacaagacaatcctaaaacaaatgtatggaaagattctcaagaa-----------aggtgatattttcaagttgctgaaattcaagatccct |
91 |
Q |
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| T |
12451365 |
gataatactacacaacaatcctaaaacaaatgtgtggaaagattctcaagaaaggttattacaaggtgatattttcaagtggctgaaattcaagagccct |
12451266 |
T |
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| Q |
92 |
attgataccaaca |
104 |
Q |
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| T |
12451265 |
attgattccaaca |
12451253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 26370732 - 26370774
Alignment:
| Q |
173 |
aatatggataattttgattgtccaacttaaactcaaatgtttt |
215 |
Q |
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| T |
26370732 |
aatatggctaattttgattgtccaactcaaactcaaaagtttt |
26370774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 5556144 - 5556099
Alignment:
| Q |
110 |
tagaatatgaaaatttacaaactctatggaaatgctgaaattagca |
155 |
Q |
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| T |
5556144 |
tagaatatgaaaatctaaaaaatctatcgaaatgctgaaattagca |
5556099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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