View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9477_low_3 (Length: 501)
Name: NF9477_low_3
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 1961237 - 1960980
Alignment:
| Q |
1 |
ctatgagacgctgcgatttgaattgaaagacgaggttggagtaacgatagcaacacacggttggattggaagtgaaatgacgagaggcaagttcatgcta |
100 |
Q |
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| T |
1961237 |
ctatgagacgctgcgatttgaattgaaagacgaggttggagtaacgatagcaacacacggttggattggaagtgaaatgacgagaggcaagttcatgcta |
1961138 |
T |
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| Q |
101 |
gaggagggggctgacatgcagtggaaggaagaaagaggagtaagacccttgctacaagttgcatttgcacctgtacattatagttatagtaaatgacaaa |
200 |
Q |
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| T |
1961137 |
gaggagggggctgacatgcagtggaaggaagaaagagaagtaagtcccttgctacaagttgcatttgcaactgtacataatagttatagtaaatgacaaa |
1961038 |
T |
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| Q |
201 |
aacaacacatttttgctatatatattcatgacaattaacatttaatgtcggatacttg |
258 |
Q |
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| T |
1961037 |
aacaacacatttttgctatatatattcatgacaattaacatttaatgtcggatacttg |
1960980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 356 - 419
Target Start/End: Complemental strand, 1960843 - 1960780
Alignment:
| Q |
356 |
taggtgtgttgtgatctcctatctctctggagttaatataagcaaaaaagtacatttatccgaa |
419 |
Q |
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| T |
1960843 |
taggtgtgttgtgatctcctatctctctggagttaatataagcaaaaaagtacatgtatccgaa |
1960780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 1960933 - 1960873
Alignment:
| Q |
295 |
gatagatagaattgtatcacgtggcgcaacgtgaataagcaaacagtgttttatcaataga |
355 |
Q |
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| T |
1960933 |
gatagatagaattgtatcacgtggcgcaatgtgaataagcaaacagtgttttatcaataga |
1960873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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