View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9477_low_38 (Length: 211)
Name: NF9477_low_38
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9477_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 12804644 - 12804498
Alignment:
| Q |
17 |
acagacataggtttgaatgaaaatacaaccataaaagtgtcaatactctcacaattcaccacttatttgaatgagagcataattaaggaaacatttccaa |
116 |
Q |
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| T |
12804644 |
acagacataggtt----tgaaaatacaaccataaaagtgtcaatactctcacaattcaccacttatttgaatgagagcataattaaggaaacatatccaa |
12804549 |
T |
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| Q |
117 |
tatgcattgatgagacatttgcctcacccttattttcaattgcatagtcat |
167 |
Q |
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| T |
12804548 |
tatacattgatgagacatttgcctcacccttattttcaattgcatagtcat |
12804498 |
T |
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