View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9477_low_5 (Length: 481)

Name: NF9477_low_5
Description: NF9477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9477_low_5
NF9477_low_5
[»] chr8 (2 HSPs)
chr8 (105-465)||(4639426-4639786)
chr8 (13-49)||(4639835-4639871)
[»] chr1 (4 HSPs)
chr1 (143-384)||(48511429-48511666)
chr1 (380-455)||(48511739-48511814)
chr1 (13-45)||(39650423-39650455)
chr1 (13-45)||(50065688-50065720)
[»] chr4 (4 HSPs)
chr4 (13-50)||(1227928-1227965)
chr4 (13-45)||(12572592-12572624)
chr4 (13-45)||(33161854-33161886)
chr4 (13-45)||(47043809-47043841)
[»] chr2 (1 HSPs)
chr2 (13-44)||(12967446-12967477)
[»] chr7 (2 HSPs)
chr7 (13-45)||(26502251-26502283)
chr7 (13-45)||(26590431-26590463)
[»] chr5 (1 HSPs)
chr5 (13-45)||(40017173-40017205)
[»] chr3 (1 HSPs)
chr3 (13-45)||(2325432-2325464)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 105 - 465
Target Start/End: Complemental strand, 4639786 - 4639426
Alignment:
Q  105 cattttgagtatagtttcacacatatcatatcccagtgacacaaatgtgattacaaatgtctcttacctccctgccacttattaacacttgtttctctct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639786 cattttgagtatagtttcacacatatcatatcccagtgacacaaatgtgattacaaatgtctcttacctccctgccacttattaacacttgtttctctct 4639687  T
Q  205 cttttaaataaccctcttgttctttcattttctcttccattaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaacttcaag 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639686 cttttaaataaccctcttgttctttcattttctcttccattaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaacttcaag 4639587  T
Q  305 taatggaaaccaaagatgaacctcaagtaatggaccatttgaccataccaacaacaacaacaactgggaccagtttctcttttctctcttcacaacacac 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639586 taatggaaaccaaagatgaacctcaagtaatggaccatttgaccataccaacaacaacaacaactgggaccagtttctcttttctctcttcacaacacac 4639487  T
Q  405 ccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaatatt 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639486 ccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaatatt 4639426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 4639871 - 4639835
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattctgacca 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  4639871 cacagaccaaaaaacatttgttcttcaattctgacca 4639835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 8e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 143 - 384
Target Start/End: Original strand, 48511429 - 48511666
Alignment:
Q  143 acacaaatgtgattacaaatgtctcttacc-tccctgccacttattaacactt-gtttctctctcttttaaataaccctcttgttctttcattttctctt 240  Q
    ||||||| ||| |||||||||||||| ||| || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  48511429 acacaaacgtgcttacaaatgtctctcaccctcactgccacttattaacactttgtttttctctcttttaaataaccctcttgttctttcattttctctt 48511528  T
Q  241 ccattaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaacttcaagtaatggaaaccaaagatgaacctcaagtaatggacc 340  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||    
T  48511529 ccataaaaccctcctacatttccttttcaacctttgaaatcatcaatcccatttcaactt---gtaatggaaaccaaagatgaacttcaagtaatggacc 48511625  T
Q  341 atttgaccataccaacaacaacaacaactgggaccagtttctct 384  Q
    ||||||||||||   ||||||||||| |||||||||||||||||    
T  48511626 atttgaccatac---caacaacaacatctgggaccagtttctct 48511666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 455
Target Start/End: Original strand, 48511739 - 48511814
Alignment:
Q  380 tctcttttctctcttcacaacacacccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaaccacca 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||    
T  48511739 tctcttttctctcttcacaacacacccaaaatgctttgttttggtgactatcaaaatgaaattcatgaaacaacca 48511814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 39650455 - 39650423
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattctg 45  Q
    ||||||||||||||||||||||||||| |||||    
T  39650455 cacagaccaaaaaacgtttgttcttcagttctg 39650423  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 50065720 - 50065688
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattctg 45  Q
    ||||||||||||||||||||||||||| |||||    
T  50065720 cacagaccaaaaaacgtttgttcttcagttctg 50065688  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 1227928 - 1227965
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattctgaccac 50  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  1227928 cacagaccaaaaaacgtttgttcttcagttctgaccac 1227965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 12572624 - 12572592
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattctg 45  Q
    ||||||||||||||||||||||||||| |||||    
T  12572624 cacagaccaaaaaacgtttgttcttcagttctg 12572592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 33161886 - 33161854
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattctg 45  Q
    ||||||||||||||||||||||||||| |||||    
T  33161886 cacagaccaaaaaacgtttgttcttcagttctg 33161854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 47043809 - 47043841
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattctg 45  Q
    ||||||||||||||||||||||||||| |||||    
T  47043809 cacagaccaaaaaacgtttgttcttcagttctg 47043841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 44
Target Start/End: Complemental strand, 12967477 - 12967446
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattct 44  Q
    ||||||||||||||||||||||||||||||||    
T  12967477 cacagaccaaaaaacgtttgttcttcaattct 12967446  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 26502251 - 26502283
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattctg 45  Q
    ||||||||||||||||||||||||||| |||||    
T  26502251 cacagaccaaaaaacgtttgttcttcagttctg 26502283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 26590463 - 26590431
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattctg 45  Q
    ||||||||||||||||||||||||||| |||||    
T  26590463 cacagaccaaaaaacgtttgttcttcagttctg 26590431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 40017173 - 40017205
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattctg 45  Q
    ||||||||||||||||||||||||||| |||||    
T  40017173 cacagaccaaaaaacgtttgttcttcagttctg 40017205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 2325432 - 2325464
Alignment:
Q  13 cacagaccaaaaaacgtttgttcttcaattctg 45  Q
    ||||||||||||||||||||||||||| |||||    
T  2325432 cacagaccaaaaaacgtttgttcttcagttctg 2325464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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