View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9478_high_1 (Length: 374)

Name: NF9478_high_1
Description: NF9478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9478_high_1
NF9478_high_1
[»] chr5 (2 HSPs)
chr5 (7-368)||(8512293-8512652)
chr5 (234-279)||(31506760-31506805)
[»] chr4 (4 HSPs)
chr4 (234-279)||(23391940-23391985)
chr4 (234-279)||(49705161-49705206)
chr4 (234-276)||(45621754-45621796)
chr4 (234-279)||(48997144-48997189)
[»] chr3 (3 HSPs)
chr3 (234-301)||(40291674-40291741)
chr3 (234-279)||(50327317-50327362)
chr3 (237-281)||(44415054-44415098)
[»] chr8 (1 HSPs)
chr8 (234-279)||(4884246-4884291)
[»] chr2 (1 HSPs)
chr2 (234-279)||(43178417-43178462)
[»] chr7 (2 HSPs)
chr7 (234-276)||(17189433-17189475)
chr7 (234-279)||(31846599-31846644)


Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 368
Target Start/End: Complemental strand, 8512652 - 8512293
Alignment:
Q  7 attacggctcgtatatatgtttcattcttccaagcgaaactgttatttaaaacatgggttcacgttttatttcatctgttaaaggaaagaaaattactgg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||    
T  8512652 attacggctcgtatatatgtttcattcttccaagcgaaactgttatttaaaacatgggttcacgttttatttcatttgctaaaggaaagaaaattgctgg 8512553  T
Q  107 ggtct-attctcaattccatggtccaggacttcataatttggtatcctcatcgtacacgattacttcaaaatagtaacaatgccatgatgacacctataa 205  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8512552 ggtcttattctcaattccatggtccaggacttcataatttggtatcctcatcgtacacgattacttcaaaatagtaacaatgccatgatgacacctataa 8512453  T
Q  206 aggcaataccatttaatcatcttaacatgggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaatcttactaaaattaactgaacccgta 305  Q
    |||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||| ||    
T  8512452 aggcaataccatttaatcatctt---atgagtggacaaaaataaccaaaaatcaaatcgaaccggttaaccaaactttactaaaattaactgaacccata 8512356  T
Q  306 agttttggccttatactgcataggttttataagctccgactctatctaaaacgagtataatct 368  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8512355 agttttggccttgtactgcataggttttataagctccgactctatctaaaactagtataatct 8512293  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 31506760 - 31506805
Alignment:
Q  234 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 279  Q
    |||||| |||||||||||||||| ||| | ||||||||||||||||    
T  31506760 gggtgggcaaaaataaccaaaaaccaatttgaaccggttaaccgaa 31506805  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 23391940 - 23391985
Alignment:
Q  234 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 279  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  23391940 gggtgggcaaaaataaccaaaaatcaattcgaaccggttaaccgaa 23391985  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 49705161 - 49705206
Alignment:
Q  234 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 279  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||    
T  49705161 gggtgggcaaaaataaccaaaaaccaattcgaaccggttaaccgaa 49705206  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 45621796 - 45621754
Alignment:
Q  234 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaacc 276  Q
    ||||||||||||||||||||||| ||| || ||||||||||||    
T  45621796 gggtggacaaaaataaccaaaaaccaattcaaaccggttaacc 45621754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 48997189 - 48997144
Alignment:
Q  234 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 279  Q
    |||||| |||||||| |||||||| |||||||| ||||||||||||    
T  48997189 gggtgggcaaaaatatccaaaaattaaatcgaatcggttaaccgaa 48997144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 40291674 - 40291741
Alignment:
Q  234 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaatcttactaaaattaactgaacc 301  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||| | ||  | |||||||||||||    
T  40291674 gggtgggcaaaaataaccaaaaaccaattcgaaccggttaaccgaaccgtatcagaattaactgaacc 40291741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 50327317 - 50327362
Alignment:
Q  234 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 279  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||    
T  50327317 gggtgggcaaaaataaccaaaaaccaattcgaaccggttaaccgaa 50327362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 44415054 - 44415098
Alignment:
Q  237 tggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaatc 281  Q
    |||||||||||||||||||| ||| ||||| ||||||| ||||||    
T  44415054 tggacaaaaataaccaaaaaccaattcgaatcggttaatcgaatc 44415098  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 4884246 - 4884291
Alignment:
Q  234 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 279  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||    
T  4884246 gggtgggcaaaaataaccaaaaaccaattcgaaccggttaaccgaa 4884291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 43178462 - 43178417
Alignment:
Q  234 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 279  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||    
T  43178462 gggtgggcaaaaataaccaaaaaccaattcgaaccggttaaccgaa 43178417  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 17189475 - 17189433
Alignment:
Q  234 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaacc 276  Q
    |||||| |||||||||||||||| |||||| ||||||||||||    
T  17189475 gggtgggcaaaaataaccaaaaaccaaatctaaccggttaacc 17189433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 31846644 - 31846599
Alignment:
Q  234 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 279  Q
    |||||| |||||||||||||||| ||| |||||| |||||||||||    
T  31846644 gggtgggcaaaaataaccaaaaaccaattcgaactggttaaccgaa 31846599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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