View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9478_low_1 (Length: 466)
Name: NF9478_low_1
Description: NF9478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9478_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Original strand, 45790971 - 45791414
Alignment:
| Q |
17 |
actctagaagttacagccaatgcattacattttctacctttgtttaagtccaaaatttccattatcctactttccatttactcaatcaagcaaatgcttg |
116 |
Q |
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| T |
45790971 |
actctagaagttacagccaatgcattacattttctacctttgtttaagtccaaaatttccattatcctactttccatttactcaatcaagcaaatgcttg |
45791070 |
T |
|
| Q |
117 |
tactttagtataaatgctatattgctatgaagtttgaagtttgtattatcagttgttgcttccctttattattttatacctgaagcttatatcaattttg |
216 |
Q |
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| T |
45791071 |
tactttagtataaatgctatattgctatgaagtttgaagtttgtattatcagttgttgcttccctttattattttatacctgaagcttatatcaattttg |
45791170 |
T |
|
| Q |
217 |
gttaccatttgcagatgatacagaactgtttgatgttcccgcagtttctaatattaggcaggatttaactgagtggcaggaaaaacatgccaatcttgtt |
316 |
Q |
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| T |
45791171 |
gttaccatttgcagatgatacagaactgtttgatgttcccgcagtttctaatattaggcaggatttaactgagtggcaggaaaaacatgccaatcttgtt |
45791270 |
T |
|
| Q |
317 |
ctttctactgtcaaggttgcatctatttttaatttatttaagattccaaaggatttatttacacacataatcaaaacacagtgcgtcttgaggattaaat |
416 |
Q |
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| T |
45791271 |
ctttctactgtcaaggttgcatctatttttaatttatttaagattccaaaggatttatttacacacataatcaaaacacagtgcgtcttgaggattaaat |
45791370 |
T |
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| Q |
417 |
ttcccccactattaatacctgtatttgtgaatcagaataatcta |
460 |
Q |
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| T |
45791371 |
ttcccccactattaatacctgtatttgtgaatcagaataatcta |
45791414 |
T |
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