View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9478_low_10 (Length: 220)
Name: NF9478_low_10
Description: NF9478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9478_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 7997935 - 7997742
Alignment:
| Q |
10 |
aatgttctatctctggttaaaagattcacctctcccatttactttacgaactataaaataatacacatgcagacctcaaggttcagtgatctctaagaga |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7997935 |
aatgttctatttctggttaaaagattcacctctcccatttactttacgaactataaaataatacacatgcagacctcaagattcagtgatctctaagaga |
7997836 |
T |
|
| Q |
110 |
ggtacttacaaatcatccattaaaaaggtcaacatgttggcaacaactatttttggttaaaagattcacctctcctatttagtttacgaactata |
204 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7997835 |
ggtacttacaaatcatccattaaaaa-gtcaacatgttggcaacaactatttttggataaaagattcacctctcctatttagtttacgaactata |
7997742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 155
Target Start/End: Complemental strand, 7997779 - 7997648
Alignment:
| Q |
27 |
taaaagattcacctctcccatttactttacgaactataaaat---aatacacatgcagacctcaaggttcagtgatctctaagagaggtacttacaaatc |
123 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
7997779 |
taaaagattcacctctcctatttagtttacgaactataaaattataatacccatgtagacctcaaggttcagttatctctaagagaggtacttataaatc |
7997680 |
T |
|
| Q |
124 |
atccattaaaaaggtcaacatgttggcaacaa |
155 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
7997679 |
atccattaaaaaggtcatcatgttggcaacaa |
7997648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 7997929 - 7997874
Alignment:
| Q |
156 |
ctatttttggttaaaagattcacctctcctatttagtttacgaactatagaataat |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
7997929 |
ctatttctggttaaaagattcacctctcccatttactttacgaactataaaataat |
7997874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University