View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9478_low_6 (Length: 303)
Name: NF9478_low_6
Description: NF9478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9478_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 43732892 - 43733170
Alignment:
| Q |
17 |
atagtacatatttggatatacttttttcaatcactagtaaaataatgtagatgaatcatagttccatcccaactattgggtgaaattgcttaattcgtac |
116 |
Q |
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| T |
43732892 |
atagtacatatttggatatacttttttcaatcactagtaaaataatgttgatgaatcatagttccatcccaactattgggtgaaattgcttaattcgtac |
43732991 |
T |
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| Q |
117 |
aacactcatgccaaattgcaattgaacaaagcatatcacatcattcaagatagtgtgtactttctcttatattttaactaattcaaatctttgtgattcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43732992 |
aacactcatgccaaattgcaattgaacaaagcatatcacatcattcaagatagtgtgtactttctcatatattttaactaattcaaatctttgtgattcc |
43733091 |
T |
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| Q |
217 |
tcttttagaaataattaattcgacatagtccaatgatgttccaatatattcagacaatcttgcagtactaagtataata |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43733092 |
tcttttagaaataattaattcgacatagtccaatgatgttccaatatattcagacaatcttgcagtactaagtataata |
43733170 |
T |
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