View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9478_low_7 (Length: 284)
Name: NF9478_low_7
Description: NF9478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9478_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 39554091 - 39553836
Alignment:
| Q |
19 |
ttaattatcatcgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaa |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554091 |
ttaattatcattgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaa |
39553992 |
T |
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| Q |
119 |
acatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgacccc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553991 |
acatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgacccc |
39553892 |
T |
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| Q |
219 |
acgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553891 |
acgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
39553836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 26 - 274
Target Start/End: Complemental strand, 39544065 - 39543817
Alignment:
| Q |
26 |
tcatcgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaacatgtt |
125 |
Q |
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|||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
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| T |
39544065 |
tcattgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatattctgcaaacatgtt |
39543966 |
T |
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| Q |
126 |
ccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgaccccacgacgc |
225 |
Q |
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| T |
39543965 |
ccttgtatcatgggccgagatagctcgacccaacaataacaagtctttgatcccaacaatgcaaccttgttttagacggtcacttatgaccccacgacgc |
39543866 |
T |
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| Q |
226 |
ccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
274 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
39543865 |
ccaccttccatacatccttcactttatgacatgtatgtccccatctctg |
39543817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 38 - 272
Target Start/End: Complemental strand, 39587182 - 39586948
Alignment:
| Q |
38 |
tgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaacatgttccttgtatcatg |
137 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| ||||| || |||||||||||||||||||| ||||||||||| |
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| T |
39587182 |
tgcaggcaacttggatgaaatgtggtgggttagtagtggcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttcttgtatcatg |
39587083 |
T |
|
| Q |
138 |
ggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgaccccacgacgcccaccttccatc |
237 |
Q |
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|||||||||||| || | | ||||||||||||||||||||||||| ||||||||||||| | |||| |||||||||||| ||| ||||||||||||| |
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| T |
39587082 |
ggccgagatagcccgatcgagcaataacaagtctttgatcccaacaacacaaccttgttttcaaaggtcccttctgaccccaagacacccaccttccatc |
39586983 |
T |
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| Q |
238 |
catccttcaatttatgacatgtatgtccccatctc |
272 |
Q |
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||||||||| | ||||||||||| |||||||||| |
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| T |
39586982 |
catccttcactctatgacatgtacatccccatctc |
39586948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 17503893 - 17503782
Alignment:
| Q |
35 |
ctatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaacatgttccttgtatc |
134 |
Q |
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||||||||||||||| | || |||||||| |||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||||||||||| ||||| |
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| T |
17503893 |
ctatgcaggcaacttcattaaagtgtggtgggatagtagtggcatgcacatttgatcatcgcatagcagatgcatattcaacaaacatgttcctagtatc |
17503794 |
T |
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| Q |
135 |
atgggccgagat |
146 |
Q |
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|||||||||||| |
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| T |
17503793 |
atgggccgagat |
17503782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 17475735 - 17475654
Alignment:
| Q |
70 |
gtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaacatgttccttgtatcatgggccgagatagctc |
151 |
Q |
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|||||||| ||||| ||||| ||||| ||||| |||||||| || ||||||||||| | ||||||||||||||||| |||| |
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| T |
17475735 |
gtagtggcatgcacatttgatcatcgcatagcagatgcctactcaacaaacatgttcttagtatcatgggccgagatggctc |
17475654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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