View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9479_high_1 (Length: 460)
Name: NF9479_high_1
Description: NF9479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9479_high_1 |
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| [»] scaffold0256 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 16783600 - 16784043
Alignment:
| Q |
1 |
tgaaattccaattaaacatatcaagaaattactctatacaacagacaattgaaaaaatataacggggaacatggtattcaaacatgagtgatgcttatcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16783600 |
tgaaattccaattaaacatatcaagaaattactctatacaacagacaattgaaaaaatataacggggaacatggtattcaaacatgagtgatgcttatcg |
16783699 |
T |
|
| Q |
101 |
cataacgtactctcataaaatacagaacattgacaaaatgccaagaattgtaatccatttcaaatgtaattaattcaacagcaaagataacagagcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16783700 |
cataacgtactctcataaaatacagaacattgacaaaatgccaagaattgtaatccatttcaaatgtaattaattcaacagcaaagataacagagcaata |
16783799 |
T |
|
| Q |
201 |
tgcaggcaataatcaaatcaaatttctgtttaacggagccaagttgagcattttgtttgaacttcaaaactgatcagccctaaactgcaattaagatcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16783800 |
tgcaggcaataatcaaatcaaatttctgtttaacggagccaagttgagcattttgtttgaacttcaaaactgatcagccctaaactgcaattaagatcaa |
16783899 |
T |
|
| Q |
301 |
cattgattttaaatcctttcaatgaaactattataattatattactgaacgtcacatatcacacgcacatatatgcactttacctcgataacaacgccat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16783900 |
cattgattttaaatcctttcaatgaaactattataattatattactgaatgtcacatatcacacgcacatatatgcactttacctcgataacaacgccat |
16783999 |
T |
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| Q |
401 |
gcaactccttgtgcgagaaattccttagaaaatacggttcattt |
444 |
Q |
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| T |
16784000 |
gcaactccttgtgcgagaaattccttagaaaatacggttcattt |
16784043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 16571969 - 16571896
Alignment:
| Q |
157 |
atttcaaatgtaattaattcaacagcaaagataacagagcaatatgcaggcaataatcaaatcaaatttctgtt |
230 |
Q |
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| T |
16571969 |
atttcaaatgtaattaattcagcagaaaagagaacaaggaaatatgcaactaatattcaaatcagatttctgtt |
16571896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 16571860 - 16571812
Alignment:
| Q |
279 |
cctaaactgcaattaagatcaacattgattttaaatcctttcaatgaaa |
327 |
Q |
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| T |
16571860 |
cctaatctgcagttcagatcaacattgattttaaatcatttctatgaaa |
16571812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 136 - 325
Target Start/End: Complemental strand, 21628349 - 21628161
Alignment:
| Q |
136 |
aaatgccaagaattgtaatccatttcaaatgtaattaattcaacagcaaagataacagagcaatatgcaggcaataatcaaatcaaatttctgtttaacg |
235 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| | |
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| T |
21628349 |
aaatgccaagaattgtaatccatatcaaatgtaattaattcaacagcaaagagaacggagcagt-tgcaggcaataatcaaatcaaatttctgtttaaag |
21628251 |
T |
|
| Q |
236 |
gagccaagttgagcattttgtttgaacttcaaaactgatcagccctaaactgcaattaagatcaacattgattttaaatcctttcaatga |
325 |
Q |
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||| |||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
21628250 |
tagcgaagttgagcaattatattgcccttcaaaactgatcagccctaaactgcaattcagatcaacattgattttaaatcatttctatga |
21628161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 54 - 243
Target Start/End: Complemental strand, 32792156 - 32791968
Alignment:
| Q |
54 |
aaaatataacggggaacatggtattcaaacatgagtgatgcttatcgcataacgtactctcataaaatacagaacattgacaaaatgccaagaattgtaa |
153 |
Q |
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||||||||| | |||||| ||| ||||| |||| |||||| ||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
32792156 |
aaaatataatgcggaacacggtgttcaagcatgtgtgatgtttaacgcatattgtactcacataaaatacataacattgacaaaatgccaagaattgtaa |
32792057 |
T |
|
| Q |
154 |
tccatttcaaatgtaattaattcaacagcaaagataacagagcaatatgcaggcaataatcaaatcaaatttctgtttaacggagccaag |
243 |
Q |
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| T |
32792056 |
tccatatcaagtgtaattaattcaacagtaaagagaatggagcagt-tgcaggcaataatcaaatcaaaattctgtttaaagtagccaag |
32791968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 14530910 - 14530867
Alignment:
| Q |
101 |
cataacgtactctcataaaatacagaacattgacaaaatgccaa |
144 |
Q |
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| T |
14530910 |
cataatgtactcacataaaatacagaacattgacaaaatgccaa |
14530867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 11794 - 11867
Alignment:
| Q |
157 |
atttcaaatgtaattaattcaacagcaaagataacagagcaatatgcaggcaataatcaaatcaaatttctgtt |
230 |
Q |
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||||||||||||||| ||||| ||| ||||| ||||| ||||||||||| |||| |||||||||||||||||| |
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| T |
11794 |
atttcaaatgtaattgattcagcagaaaagagaacagggcaatatgcagttaatattcaaatcaaatttctgtt |
11867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 11903 - 11951
Alignment:
| Q |
279 |
cctaaactgcaattaagatcaacattgattttaaatcctttcaatgaaa |
327 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||| |||||| |
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| T |
11903 |
cctaaactgcaattcagatcaacattgattttaaatcatttctatgaaa |
11951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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