View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9479_high_4 (Length: 298)
Name: NF9479_high_4
Description: NF9479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9479_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 29640978 - 29640717
Alignment:
| Q |
14 |
tttatattatagtcttatacattatgtaactttatttattcttgttttaaaattaaatttttcttagtcaagattagcaaaaatttatacaattataaaa |
113 |
Q |
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| T |
29640978 |
tttatattatagtcttatacattatgtaactttatttattcttgttttaaaattaaatttttcttagtcaagattagcaaaaatttatacaattataaaa |
29640879 |
T |
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| Q |
114 |
gaactgaaagcataaatgataatagcaaaccttgctcaaaaaataataataacaaaccaaattcaagctttactactaattgtaacaagcaaaactcaan |
213 |
Q |
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| T |
29640878 |
gaactgaaagcataaatgataatagcaaaccttgctcaaaaaataataataacaaaccaaattcaagctttactactaattgtaacaagcaaaactcaat |
29640779 |
T |
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| Q |
214 |
nnnnnnagttaaactcttttatttatataagtcaaacctcaagtcattggtttttctcacaagtta |
279 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29640778 |
ttttttagttaaactct----tttatataagtcaaacctcaagtcattggtttttctcacaagtta |
29640717 |
T |
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