View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9479_high_5 (Length: 279)
Name: NF9479_high_5
Description: NF9479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9479_high_5 |
 | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 35776298 - 35776455
Alignment:
| Q |
18 |
tcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgaccttgtactggaaatggtacaaatacagcatg |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35776298 |
tcacaaaggttatgtgaaaacctttgcaacgaaagagtttggcaagttgcatgaaagggttcacatgaccttgtactggaaatggtacaaatacagcatg |
35776397 |
T |
|
| Q |
118 |
aggcttttgttggatatgcgtagagggagaataagaatccatttttgttcaaatatca |
175 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35776398 |
aggcttttgttgaatatgcgtagagggagaataagaatccatttttgttcaaatatca |
35776455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 35854613 - 35854721
Alignment:
| Q |
18 |
tcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgaccttgtactggaaatggtacaaatacagcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
35854613 |
tcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgaccttgtgctggaaatggtactaatacaacatg |
35854712 |
T |
|
| Q |
118 |
aggcttttg |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
35854713 |
aggcttttg |
35854721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 35869222 - 35869330
Alignment:
| Q |
18 |
tcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgaccttgtactggaaatggtacaaatacagcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||| |
|
|
| T |
35869222 |
tcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgaccttgtgctggaaatggtgctaatacaacatg |
35869321 |
T |
|
| Q |
118 |
aggcttttg |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
35869322 |
aggcttttg |
35869330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 35842105 - 35842213
Alignment:
| Q |
18 |
tcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgaccttgtactggaaatggtacaaatacagcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||| |
|
|
| T |
35842105 |
tcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgaccttgtgctggaaatggtgctaatacaacatg |
35842204 |
T |
|
| Q |
118 |
aggcttttg |
126 |
Q |
| |
|
|||||||| |
|
|
| T |
35842205 |
tggcttttg |
35842213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 35759873 - 35759981
Alignment:
| Q |
18 |
tcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgaccttgtactggaaatggtacaaatacagcatg |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| |||| |||||| || || || |||||||| ||| |||| |||| || ||||||||||| |
|
|
| T |
35759873 |
tcacaaaggttatgtggaaaccgttgcaacgcaggagtttagctagttgcattaagggattaacatgaccctgtgctgggtatggcactaatacagcatg |
35759972 |
T |
|
| Q |
118 |
aggcttttg |
126 |
Q |
| |
|
||||||| |
|
|
| T |
35759973 |
tagcttttg |
35759981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 35738080 - 35738157
Alignment:
| Q |
50 |
aggagtttggctaattgcatgaaagggttcacatgaccttgtactggaaatggtacaaatacagcatgaggcttttgt |
127 |
Q |
| |
|
|||| ||| |||||||||||||||||||| || ||||||||| |||||||||||||| | || |||||||||||||| |
|
|
| T |
35738080 |
aggattttagctaattgcatgaaagggtttacgtgaccttgtgctggaaatggtacacaaactacatgaggcttttgt |
35738157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 1945 - 1828
Alignment:
| Q |
18 |
tcacaaaggttatgtgaaaaccgttgcaacgtaggagtttggctaattgcatgaaagggttcacatgaccttgtactggaaatggtacaaatacagcatg |
117 |
Q |
| |
|
||||||||||||| || ||||| |||||||| | ||||||||||| |||||| | |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1945 |
tcacaaaggttatatggaaacctttgcaacggaagagtttggctagttgcatcattgggttcacatgaccttgtgctggaaatggtacaaatacagcatg |
1846 |
T |
|
| Q |
118 |
aggcttttgttggatatg |
135 |
Q |
| |
|
|| ||||||||| |||| |
|
|
| T |
1845 |
tggtttttgttgggtatg |
1828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University