View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9479_low_14 (Length: 243)

Name: NF9479_low_14
Description: NF9479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9479_low_14
NF9479_low_14
[»] chr4 (14 HSPs)
chr4 (19-230)||(6280638-6280849)
chr4 (21-78)||(4980000-4980057)
chr4 (19-77)||(44051173-44051231)
chr4 (21-76)||(4975752-4975807)
chr4 (28-78)||(28320492-28320542)
chr4 (20-77)||(50278880-50278937)
chr4 (27-78)||(46165679-46165730)
chr4 (19-77)||(49572981-49573039)
chr4 (21-74)||(37959803-37959856)
chr4 (19-78)||(50274693-50274752)
chr4 (20-74)||(21470840-21470894)
chr4 (32-78)||(38464859-38464905)
chr4 (32-77)||(46097041-46097086)
chr4 (38-74)||(18581395-18581431)
[»] chr8 (13 HSPs)
chr8 (21-77)||(2147039-2147095)
chr8 (19-77)||(43377333-43377391)
chr8 (20-77)||(34823098-34823155)
chr8 (20-77)||(39753079-39753136)
chr8 (19-77)||(35389442-35389500)
chr8 (19-77)||(39751008-39751066)
chr8 (19-77)||(41250152-41250210)
chr8 (27-80)||(34503147-34503200)
chr8 (20-77)||(5300681-5300738)
chr8 (19-77)||(18438568-18438626)
chr8 (19-77)||(18441522-18441580)
chr8 (19-77)||(40077331-40077389)
chr8 (19-77)||(44052307-44052365)
[»] chr1 (19 HSPs)
chr1 (19-78)||(49924789-49924848)
chr1 (27-77)||(49874942-49874992)
chr1 (32-77)||(1872042-1872087)
chr1 (20-77)||(8460178-8460235)
chr1 (21-78)||(22345194-22345251)
chr1 (27-78)||(9618655-9618706)
chr1 (19-78)||(18975201-18975260)
chr1 (18-77)||(27487716-27487775)
chr1 (19-78)||(29438101-29438160)
chr1 (24-77)||(22346099-22346152)
chr1 (18-78)||(21144684-21144744)
chr1 (27-78)||(640986-641037)
chr1 (19-78)||(6437620-6437679)
chr1 (19-74)||(26633467-26633522)
chr1 (19-74)||(35521551-35521606)
chr1 (19-74)||(41804114-41804169)
chr1 (27-77)||(38127578-38127628)
chr1 (21-78)||(8458918-8458975)
chr1 (19-79)||(46141714-46141774)
[»] chr6 (15 HSPs)
chr6 (19-77)||(29286163-29286221)
chr6 (19-78)||(18605978-18606037)
chr6 (20-78)||(2052665-2052722)
chr6 (20-78)||(7361124-7361182)
chr6 (28-77)||(25141169-25141218)
chr6 (18-77)||(2050963-2051022)
chr6 (19-77)||(117915-117973)
chr6 (19-77)||(29065674-29065732)
chr6 (19-77)||(29074687-29074745)
chr6 (19-77)||(29079451-29079509)
chr6 (19-77)||(29107260-29107318)
chr6 (20-74)||(32026042-32026096)
chr6 (19-47)||(7537162-7537190)
chr6 (34-78)||(13401419-13401463)
chr6 (38-74)||(17996542-17996578)
[»] chr7 (18 HSPs)
chr7 (19-78)||(34622432-34622491)
chr7 (19-77)||(34623461-34623519)
chr7 (19-78)||(28980254-28980313)
chr7 (19-77)||(48829897-48829955)
chr7 (27-78)||(35839323-35839374)
chr7 (19-78)||(41623896-41623955)
chr7 (20-78)||(19044227-19044285)
chr7 (20-78)||(20710351-20710409)
chr7 (19-77)||(48314608-48314666)
chr7 (32-77)||(48269615-48269660)
chr7 (19-54)||(34139854-34139889)
chr7 (19-78)||(36392058-36392117)
chr7 (27-77)||(30471628-30471678)
chr7 (19-77)||(46596830-46596888)
chr7 (19-77)||(46863425-46863483)
chr7 (20-77)||(5537800-5537857)
chr7 (38-74)||(11100547-11100583)
chr7 (18-54)||(34738331-34738367)
[»] chr3 (22 HSPs)
chr3 (19-78)||(6489266-6489325)
chr3 (20-77)||(6506033-6506090)
chr3 (18-77)||(41805755-41805814)
chr3 (19-77)||(55267375-55267433)
chr3 (32-78)||(2433037-2433083)
chr3 (20-77)||(32060294-32060351)
chr3 (20-77)||(55205271-55205328)
chr3 (21-77)||(7837526-7837582)
chr3 (19-78)||(7247941-7248000)
chr3 (19-78)||(50216935-50216994)
chr3 (19-74)||(55385074-55385129)
chr3 (19-77)||(19454406-19454464)
chr3 (19-77)||(51696596-51696654)
chr3 (19-78)||(600625-600684)
chr3 (19-78)||(16647228-16647287)
chr3 (27-74)||(37686185-37686232)
chr3 (19-78)||(47070401-47070460)
chr3 (19-78)||(52567696-52567755)
chr3 (32-74)||(29929363-29929405)
chr3 (32-74)||(29978517-29978559)
chr3 (32-77)||(46344871-46344916)
chr3 (21-74)||(52570648-52570701)
[»] scaffold0169 (1 HSPs)
scaffold0169 (19-77)||(1726-1784)
[»] chr2 (17 HSPs)
chr2 (19-74)||(435280-435335)
chr2 (19-78)||(25184910-25184969)
chr2 (19-78)||(41497405-41497464)
chr2 (18-76)||(41004464-41004522)
chr2 (21-77)||(24607651-24607707)
chr2 (30-77)||(41183303-41183350)
chr2 (28-78)||(4014201-4014251)
chr2 (19-77)||(35493422-35493480)
chr2 (19-77)||(41053749-41053807)
chr2 (19-77)||(41181371-41181429)
chr2 (20-77)||(41052615-41052672)
chr2 (19-78)||(16580478-16580537)
chr2 (19-77)||(9660136-9660194)
chr2 (19-74)||(28342460-28342515)
chr2 (28-78)||(15488232-15488282)
chr2 (19-77)||(23346715-23346773)
chr2 (20-73)||(82343-82396)
[»] scaffold0340 (1 HSPs)
scaffold0340 (20-78)||(1262-1320)
[»] chr5 (15 HSPs)
chr5 (19-77)||(7796595-7796653)
chr5 (19-77)||(18310102-18310160)
chr5 (19-77)||(31094497-31094555)
chr5 (21-78)||(25877555-25877612)
chr5 (20-77)||(38407133-38407190)
chr5 (18-78)||(3603228-3603288)
chr5 (19-78)||(4204290-4204349)
chr5 (27-78)||(8680331-8680382)
chr5 (19-77)||(20200229-20200287)
chr5 (18-74)||(30887440-30887496)
chr5 (19-74)||(1397431-1397486)
chr5 (19-78)||(20192286-20192345)
chr5 (32-77)||(26366822-26366867)
chr5 (20-76)||(7801069-7801125)
chr5 (32-72)||(33995242-33995282)
[»] scaffold0192 (1 HSPs)
scaffold0192 (20-77)||(25886-25943)
[»] scaffold0794 (1 HSPs)
scaffold0794 (30-77)||(5218-5265)
[»] scaffold0219 (1 HSPs)
scaffold0219 (21-77)||(20196-20252)
[»] scaffold0176 (1 HSPs)
scaffold0176 (19-54)||(779-814)
[»] scaffold0184 (1 HSPs)
scaffold0184 (19-77)||(17965-18023)
[»] scaffold0078 (1 HSPs)
scaffold0078 (19-77)||(54821-54879)
[»] scaffold0618 (1 HSPs)
scaffold0618 (32-77)||(3820-3865)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 6280849 - 6280638
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctcacgaatactaaaagaccatctgatttcacatggctctgatg 118  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  6280849 gcaaaaacgtaaattactcgtgtgccccaaccttatgcaatgtgtcaacaacaattctcataaatactaaaagaccatctgatttcacgtggctctgatg 6280750  T
Q  119 gcactgatccatttaatcagcataagttcttttcttacaaattatattaacgagaaccattaacgtaacgcggttttcagtttccatttgtgattatttt 218  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6280749 gcactgatccatttaatcagcataagtttttttcttacaaattatattaacgagaaccattaacgtaacgcggttttcagtttccatttgtgattatttt 6280650  T
Q  219 ttcgtgttatct 230  Q
    ||||||||||||    
T  6280649 ttcgtgttatct 6280638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 4980000 - 4980057
Alignment:
Q  21 aaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4980000 aaaaacgtaaattactcgtgtgcctcaaccttatgcaatgtgtcaacaacaattctca 4980057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 44051173 - 44051231
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  44051173 gcaaaaacgtaaattactggtgtgcctcagccttatgcaatgtgtcaacaacaattctc 44051231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 4975807 - 4975752
Alignment:
Q  21 aaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattct 76  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||| |||||||||    
T  4975807 aaaaacgtaaattactcgtgtgcctcagcctttttcaatgtgtcaataacaattct 4975752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 28320542 - 28320492
Alignment:
Q  28 taaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  28320542 taaattactcgtgtgacacaaccttatgcaatgtgtcaacaacaattctca 28320492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 50278880 - 50278937
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||||||||||||||| |||||||||  ||||||  |||||||||||||    
T  50278880 caaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctc 50278937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 46165730 - 46165679
Alignment:
Q  27 gtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||| ||||| | || ||||||||||||||||||||||||||||||    
T  46165730 gtaaattactagtgtgacacagccttatacaatgtgtcaacaacaattctca 46165679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 49572981 - 49573039
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||  ||||| |||||||||| |||||| ||||||||||||||| ||||||    
T  49572981 gcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaacaacgattctc 49573039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 37959803 - 37959856
Alignment:
Q  21 aaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    |||||||||  |||||||||||||||| ||||||  ||||||||||||||||||    
T  37959803 aaaaacgtattttactcgtgtgcctcagccttatgtaatgtgtcaacaacaatt 37959856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 50274752 - 50274693
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||||||||||||||||| || || |||  ||||||  ||||||||||||||    
T  50274752 gcaaaaacgtaaattactcgtgtgccacagccctatcaaatgtgggaacaacaattctca 50274693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 21470894 - 21470840
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    ||||||||||  ||||| ||||||||||||||||| |||||||| || |||||||    
T  21470894 caaaaacgtattttacttgtgtgcctcaaccttatccaatgtgtaaagaacaatt 21470840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 38464859 - 38464905
Alignment:
Q  32 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  38464859 ttactcatgtacctcaaccttatgaaatgtgtcaacaacaattctca 38464905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 46097041 - 46097086
Alignment:
Q  32 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||| |||| |||||| |||||| |||||||||||||||    
T  46097041 ttactcgtgtgtctcagccttatgcaatgtatcaacaacaattctc 46097086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 18581395 - 18581431
Alignment:
Q  38 gtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    |||||||||||||||||  ||||||||||||||||||    
T  18581395 gtgtgcctcaaccttatgaaatgtgtcaacaacaatt 18581431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 2147039 - 2147095
Alignment:
Q  21 aaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2147039 aaaaacgaaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 2147095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 43377333 - 43377391
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  43377333 gcaaaaacgtaaattactcgtgtgcctcagccttatgcaacgtgtcaacaacaattctc 43377391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 34823098 - 34823155
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  34823098 caaaaacgtatattacgtgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 34823155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 39753079 - 39753136
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  39753079 caaaaatgtaaattactcgtgtgcctgagccttatacaatgtgtcaacaacaattctc 39753136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 35389500 - 35389442
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||    
T  35389500 gcaaaaacgtaaattactcgtatgtctcagccttatgcaatgtgtcaacaacaattctc 35389442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 39751066 - 39751008
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||  |||||||||||||||||| |||| ||||||||||||| ||||||||    
T  39751066 gcaaaaacgtattttactcgtgtgcctcaacattatgcaatgtgtcaacagcaattctc 39751008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 41250152 - 41250210
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||  |||||||||||||    
T  41250152 gcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgtgggaacaacaattctc 41250210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 34503147 - 34503200
Alignment:
Q  27 gtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctcacg 80  Q
    |||||||||||||||| | || |||||| |||||||||||||||||||||||||    
T  34503147 gtaaattactcgtgtgacacacccttatgcaatgtgtcaacaacaattctcacg 34503200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 5300738 - 5300681
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||  ||||||||||  |||||||||||  |||||||||||||||||||||    
T  5300738 caaaaacgtattttactcgtgtttctcaaccttatcaaatgtgtcaacaacaattctc 5300681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 18438626 - 18438568
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||| ||||  ||||| |||||| ||| |||||| ||||||||||||||||||||||    
T  18438626 gcaaaagcgtattttacttgtgtgcatcagccttatgcaatgtgtcaacaacaattctc 18438568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 18441522 - 18441580
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||  ||||| ||||| |||| ||||||  |||||||||||||||||||||    
T  18441522 gcaaaaacgtattttacttgtgtgtctcagccttatgaaatgtgtcaacaacaattctc 18441580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 40077331 - 40077389
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||  ||||||||||  |||| ||||||  |||||||||||||||||||||    
T  40077331 gcaaaaacgtattttactcgtgtttctcagccttatcaaatgtgtcaacaacaattctc 40077389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 44052307 - 44052365
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||| | ||||||||||||| |||||||||  ||||||  |||||||||||||    
T  44052307 gcaaaaacgtcatttactcgtgtgccacaaccttatgtaatgtgggaacaacaattctc 44052365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 49924848 - 49924789
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  49924848 gcaaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtcaacaacaattctca 49924789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 49874992 - 49874942
Alignment:
Q  27 gtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  49874992 gtaaattactcgtgtgacacaaccttatgcaatgtgtcaacaacaattctc 49874942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 1872087 - 1872042
Alignment:
Q  32 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||    
T  1872087 ttactcgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 1872042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 8460178 - 8460235
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||| ||||||| ||||||||| ||||||| |||||||||||| ||||||||    
T  8460178 caaaaacgtatattactcatgtgcctcagccttatagaatgtgtcaacagcaattctc 8460235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 22345251 - 22345194
Alignment:
Q  21 aaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||||||||||||||| | |||||||| |||||||||| | |||||||||    
T  22345251 aaaaacgtaaattactcgtgtgccccgaccttatagaatgtgtcaatagcaattctca 22345194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 9618706 - 9618655
Alignment:
Q  27 gtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||||||| | || |||||| |||||||||||||||||||||||    
T  9618706 gtaaattactcgtgtgacacagccttatgcaatgtgtcaacaacaattctca 9618655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 18975201 - 18975260
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||  ||||| |||| ||||| | ||||||||||||||||||||||||||||    
T  18975201 gcaaaaacgtattttacttgtgtacctcagctttatacaatgtgtcaacaacaattctca 18975260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 27487716 - 27487775
Alignment:
Q  18 agcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||  |||| ||||||||    
T  27487716 agcaaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacatcaattctc 27487775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 29438101 - 29438160
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||||||| ||||||||| |||||||||  ||||||  ||||||||||||||    
T  29438101 gcaaaaacgtaaattattcgtgtgccacaaccttatcaaatgtgggaacaacaattctca 29438160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 22346099 - 22346152
Alignment:
Q  24 aacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||| |||||||||| |||||  ||||||||||||| ||||||||    
T  22346099 aacgtaaattacttgtgtgcctcagccttaagcaatgtgtcaacagcaattctc 22346152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 21144684 - 21144744
Alignment:
Q  18 agcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||||||||||| |||||||||  ||||||||  ||||||  ||||||||||||||    
T  21144684 agcaaaaacgtaaattagtcgtgtgccagaaccttatcaaatgtgggaacaacaattctca 21144744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 641037 - 640986
Alignment:
Q  27 gtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||| ||||| | || |||||| |||||||||||||||||||||||    
T  641037 gtaaattactagtgtgacacagccttatgcaatgtgtcaacaacaattctca 640986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 6437620 - 6437679
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||| ||||  ||||| |||||||||| | |||| |||||||||||||||||||||||    
T  6437620 gcaaaagcgtattttacttgtgtgcctcagctttatgcaatgtgtcaacaacaattctca 6437679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 26633522 - 26633467
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    |||||| ||||  ||||| |||||||||||||||||  ||||||||||||||||||    
T  26633522 gcaaaagcgtattttacttgtgtgcctcaaccttatgaaatgtgtcaacaacaatt 26633467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 35521606 - 35521551
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    |||||| ||||  ||||| |||||||||| ||||||| ||||||||||||||||||    
T  35521606 gcaaaatcgtattttacttgtgtgcctcagccttataaaatgtgtcaacaacaatt 35521551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 41804114 - 41804169
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    |||||| ||||  ||||| |||||||||| ||||||| ||||||||||||||||||    
T  41804114 gcaaaagcgtattttacttgtgtgcctcagccttataaaatgtgtcaacaacaatt 41804169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 38127578 - 38127628
Alignment:
Q  27 gtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||| |||||||| |   |||||||||||||||||||||    
T  38127578 gtaaattactcgtgtgtctcaacctaaccaaatgtgtcaacaacaattctc 38127628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 8458975 - 8458918
Alignment:
Q  21 aaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||  ||||||||||| | ||||||||  ||||||||||||| |||||||||    
T  8458975 aaaaacgtattttactcgtgtgacacaaccttaagcaatgtgtcaacatcaattctca 8458918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 46141774 - 46141714
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctcac 79  Q
    |||||| ||||  ||||| |||| ||||| |||||| |||| |||||||||||||||||||    
T  46141774 gcaaaatcgtattttacttgtgtacctcagccttatgcaatatgtcaacaacaattctcac 46141714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 29286221 - 29286163
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  29286221 gcaaaaacgtaaattacttgtgtgcctcaaccttatgcaatgtgtcaacaacaattctc 29286163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 18606037 - 18605978
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||  |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  18606037 gcaaaaacgtattttactcgtgtgcctcagcctcatacaatgtgtcaacaacaattctca 18605978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 2052665 - 2052722
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||    
T  2052665 caaaaacgtaaattactcgtgtgcctc-agcttatacaatgtgccaacaacaattctca 2052722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 7361182 - 7361124
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||    
T  7361182 caaaaacgtaaattactcgtgtgccacagccttatgcaatgtgtcaacagcaattctca 7361124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 25141169 - 25141218
Alignment:
Q  28 taaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  25141169 taaattattcgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 25141218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 2051022 - 2050963
Alignment:
Q  18 agcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||  |||||||||||| ||| |||||| ||||||||||| | ||||||||    
T  2051022 agcaaaaacgtattttactcgtgtgcatcagccttatgcaatgtgtcaatagcaattctc 2050963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 117915 - 117973
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||||||||| | |||||||||  ||||||  |||| ||||||||    
T  117915 gcaaaaacgtaaattactcgtgtgacacaaccttatcaaatgtgggaacatcaattctc 117973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 29065732 - 29065674
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||| |||||||||||||||||| || ||||||  ||||||  |||||||||||||    
T  29065732 gcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattctc 29065674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 29074745 - 29074687
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||| |||||||||||||||||| || ||||||  ||||||  |||||||||||||    
T  29074745 gcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattctc 29074687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 29079509 - 29079451
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||| |||||||||||||||||| || ||||||  ||||||  |||||||||||||    
T  29079509 gcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattctc 29079451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 29107318 - 29107260
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||| |||||||||||||||||| || ||||||  ||||||  |||||||||||||    
T  29107318 gcaaaaaagtaaattactcgtgtgccacagccttatttaatgtgggaacaacaattctc 29107260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 32026096 - 32026042
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    ||||||||||  ||||| |||||||||| ||||||  ||||||||||||||||||    
T  32026096 caaaaacgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaatt 32026042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 7537190 - 7537162
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctca 47  Q
    |||||||||||||||||||||||||||||    
T  7537190 gcaaaaacgtaaattactcgtgtgcctca 7537162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 13401463 - 13401419
Alignment:
Q  34 actcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||  |||||||||||| |||||||||||| |||||||||    
T  13401463 actcgtgttactcaaccttataaaatgtgtcaacatcaattctca 13401419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 17996578 - 17996542
Alignment:
Q  38 gtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  17996578 gtgtgcctcgaccttataaaatgtgtcaacaacaatt 17996542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 34622491 - 34622432
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||    
T  34622491 gcaaaaacgtaaattacttgtgtgcctcagccttatgcaatgtgtcaacaacaattctca 34622432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 34623461 - 34623519
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||||||||| ||||||||||| |||| |||||||| ||||||||    
T  34623461 gcaaaaacgtaaattactcgtgtgtctcaaccttatgcaatatgtcaacagcaattctc 34623519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 28980254 - 28980313
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||  ||||||||||| |||| |||||| |||||||||||||||||||||||    
T  28980254 gcaaaaacgtattttactcgtgtgtctcagccttatgcaatgtgtcaacaacaattctca 28980313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 48829955 - 48829897
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||||||||||| |||||||||  ||||||  |||||||||||||    
T  48829955 gcaaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctc 48829897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 35839374 - 35839323
Alignment:
Q  27 gtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  35839374 gtaaattactagtgtgacacaaccttatgcaatgtgtcaacaacaattctca 35839323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 41623896 - 41623955
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||  ||||| |||||||||||||||||  |||||||||||| |||||||||    
T  41623896 gcaaaaacgtattttacttgtgtgcctcaaccttatgtaatgtgtcaacagcaattctca 41623955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 19044285 - 19044227
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||||  |||||| ||||||||| |||||| |||||||||||||| ||||||||    
T  19044285 caaaaacgtattttactcatgtgcctcagccttatgcaatgtgtcaacaataattctca 19044227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 20710351 - 20710409
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||||  |||||| ||||||||| |||||| |||||||||||||| ||||||||    
T  20710351 caaaaacgtattttactcatgtgcctcagccttatgcaatgtgtcaacaataattctca 20710409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 48314666 - 48314608
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||| |||  ||||| |||| |||||||||||| ||||||||||||||||||||||    
T  48314666 gcaaaaatgtattttacttgtgtacctcaaccttatgcaatgtgtcaacaacaattctc 48314608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 48269660 - 48269615
Alignment:
Q  32 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||||    
T  48269660 ttacttgtgtgcctcagccttataaaatgtgtcaacaacaattctc 48269615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 34139889 - 34139854
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttat 54  Q
    |||||||||||||||||||||||||| |||||||||    
T  34139889 gcaaaaacgtaaattactcgtgtgccacaaccttat 34139854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 36392117 - 36392058
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||  ||||| |||||||| | ||||||  ||||||||||||||||||||||    
T  36392117 gcaaaaacgtattttacttgtgtgcctaagccttatgtaatgtgtcaacaacaattctca 36392058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 30471628 - 30471678
Alignment:
Q  27 gtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||| | || |||| | ||||||||||||||||||||||    
T  30471628 gtaaattactcgtgtgacacagccttttgcaatgtgtcaacaacaattctc 30471678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 46596888 - 46596830
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||  |||||||||||| ||| |||||| ||||||||| ||| ||||||||    
T  46596888 gcaaaaacgtattttactcgtgtgcgtcagccttatgcaatgtgtccacagcaattctc 46596830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 46863425 - 46863483
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||  ||||| ||||| |||| |||||| ||||| ||||||||||||||||    
T  46863425 gcaaaaacgtattttacttgtgtgtctcagccttatgcaatgcgtcaacaacaattctc 46863483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 5537857 - 5537800
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||||| ||||||||| || ||||||  ||||||  |||||||||||||    
T  5537857 caaaaacgtaaattattcgtgtgccacagccttatcaaatgtgggaacaacaattctc 5537800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 11100547 - 11100583
Alignment:
Q  38 gtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  11100547 gtgtgcctcgaccttataaaatgtgtcaacaacaatt 11100583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 34738367 - 34738331
Alignment:
Q  18 agcaaaaacgtaaattactcgtgtgcctcaaccttat 54  Q
    ||||||||||||||||||||||||||| || ||||||    
T  34738367 agcaaaaacgtaaattactcgtgtgccacagccttat 34738331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 6489325 - 6489266
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||    
T  6489325 gcaaaaacgtaaattacttgtgtgcctcaaccttatgcaatgtgtcaacagcaattctca 6489266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 6506033 - 6506090
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  6506033 caaaaacgtaaattactcgtgtgcctcagccttatacaatgtgtcaacagtaattctc 6506090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 41805755 - 41805814
Alignment:
Q  18 agcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||||||||| |||||||||| |||||| |||||||||| |||||||||||    
T  41805755 agcaaaaacgtaaattacttgtgtgcctcagccttatgcaatgtgtcatcaacaattctc 41805814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 55267433 - 55267375
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||    
T  55267433 gcaaaaacgtaaattactcgtgtgtctcagccttatgcaacgtgtcaacaacaattctc 55267375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 2433037 - 2433083
Alignment:
Q  32 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  2433037 ttactcgtgtgcctcagccttatgcaatgtgtcaacaacaattctca 2433083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 32060294 - 32060351
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||||| ||||||| |||||| |||||||| || ||||||||||    
T  32060294 caaaaacgtaaattactcgtatgcctcagccttatgcaatgtgttaaaaacaattctc 32060351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 55205328 - 55205271
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||| | ||||||| |||||| ||||||||||||| ||||||||    
T  55205328 caaaaacgtaaattactcatatgcctcagccttatgcaatgtgtcaacatcaattctc 55205271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 7837582 - 7837526
Alignment:
Q  21 aaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||| ||||||||| ||||| |||| |||||| ||||||||||||||||||||||    
T  7837582 aaaaacttaaattacttgtgtgtctcagccttatgcaatgtgtcaacaacaattctc 7837526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 7247941 - 7248000
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||| ||||  ||| |||||||||||| |||||| |||||||||||||||||||||||    
T  7247941 gcaaaagcgtattttattcgtgtgcctcagccttatccaatgtgtcaacaacaattctca 7248000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 50216935 - 50216994
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||| ||||||||||||||| |||||||||  ||||||  ||||||||||||||    
T  50216935 gcaaaaacgtcaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctca 50216994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 55385129 - 55385074
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||  ||||||||||    
T  55385129 gcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgtgggaacaacaatt 55385074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 19454406 - 19454464
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||| ||||  ||||||||||| ||||||||||| |||||| |||||||||||||||    
T  19454406 gcaaaagcgtattttactcgtgtgtctcaaccttatgcaatgtatcaacaacaattctc 19454464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 51696596 - 51696654
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||| |||||||||||||||||| || ||||||  |||||| ||||||||||||||    
T  51696596 gcaaaaaagtaaattactcgtgtgccacagccttatcaaatgtggcaacaacaattctc 51696654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 600625 - 600684
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||| | ||||||||||||| || |||| |||||||||  ||||||||||||||    
T  600625 gcaaaaacgtcatttactcgtgtgccgcagccttctacaatgtgggaacaacaattctca 600684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 16647228 - 16647287
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||| || ||||||||||||  |||||||| |||||||  ||||||||||||||    
T  16647228 gcaaaaacgtcaagtactcgtgtgccagaaccttatgcaatgtgggaacaacaattctca 16647287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 37686232 - 37686185
Alignment:
Q  27 gtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    |||||||| ||||||| | |||| ||||||||||||||||||||||||    
T  37686232 gtaaattattcgtgtgacacaactttatacaatgtgtcaacaacaatt 37686185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 47070460 - 47070401
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||| ||||||||||||||| ||  ||||| |||||||  ||||||||||||||    
T  47070460 gcaaaaacgtcaattactcgtgtgccacagtcttatgcaatgtgggaacaacaattctca 47070401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 52567755 - 52567696
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||| ||||  |||||||||||||||| |||||| ||| || ||||||||||||||||    
T  52567755 gcaaaatcgtattttactcgtgtgcctcagccttatgcaacgtatcaacaacaattctca 52567696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 29929405 - 29929363
Alignment:
Q  32 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||    
T  29929405 ttacttgtgtgcctcagccttataaaatgtgtcaacaacaatt 29929363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 29978559 - 29978517
Alignment:
Q  32 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||    
T  29978559 ttacttgtgtgcctcagccttataaaatgtgtcaacaacaatt 29978517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 46344916 - 46344871
Alignment:
Q  32 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||| ||||||||||||||||| |||| |||||||| ||||||||    
T  46344916 ttacttgtgtgcctcaaccttatccaatttgtcaacatcaattctc 46344871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 52570648 - 52570701
Alignment:
Q  21 aaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    |||||||||  ||| |||||||||||| |||||| |||||||||||| ||||||    
T  52570648 aaaaacgtattttaatcgtgtgcctcagccttatgcaatgtgtcaacgacaatt 52570701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 1726 - 1784
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  1726 gcaaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtcaacatcaattctc 1784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 435335 - 435280
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||||||    
T  435335 gcaaaaacgtaaattactcgtgtgcctcagtcttatacagtgtgtcaacaacaatt 435280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 25184910 - 25184969
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||  ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  25184910 gcaaaaacgtattttactcgtgtgcctcaaccttatgcaatctgtcaacaacaattctca 25184969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 41497464 - 41497405
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||    
T  41497464 gcaaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtcaagagcaattctca 41497405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 41004522 - 41004464
Alignment:
Q  18 agcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattct 76  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||||||||||| |||||    
T  41004522 agcaaaaacgtaaattactcgtatgcatcagccttatacaatgtgtcaacaacgattct 41004464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 24607651 - 24607707
Alignment:
Q  21 aaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||  |||||||||| |||||| ||||||||||||||||||||||    
T  24607651 aaaaacgtaaattacctgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 24607707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 41183303 - 41183350
Alignment:
Q  30 aattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||    
T  41183303 aattactcgtgtgcctcagccttatacaatgtgtcaacagcaattctc 41183350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 4014251 - 4014201
Alignment:
Q  28 taaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||| ||||| | |||||||||||||||||||||||||||||||||    
T  4014251 taaattactagtgtgacacaaccttatacaatgtgtcaacaacaattctca 4014201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 35493422 - 35493480
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||| ||||  ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  35493422 gcaaaagcgtattttactcgtgtgtctcaaccttatgcaatgtgtcaacaacaattctc 35493480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 41053749 - 41053807
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||||| |||||||| ||||||  |||||||||||| ||||||||    
T  41053749 gcaaaaacgtaaattactcgcgtgcctcagccttatgtaatgtgtcaacagcaattctc 41053807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 41181429 - 41181371
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||  |||||||||||||||| |||||| ||||||||||||| ||||||||    
T  41181429 gcaaaaacgtattttactcgtgtgcctcagccttatgcaatgtgtcaacatcaattctc 41181371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 41052672 - 41052615
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||||||| |||||| ||| |||||| |||| |||||||||||||||||    
T  41052672 caaaaacgtaaattacttgtgtgcatcagccttatgcaatatgtcaacaacaattctc 41052615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 16580537 - 16580478
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||| |||  ||||||||||| |||| |||||| |||||||||||||||||||||||    
T  16580537 gcaaaaatgtattttactcgtgtgtctcagccttatgcaatgtgtcaacaacaattctca 16580478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 9660136 - 9660194
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||| ||||||||||||||| ||||| | |||| ||||||||||||| ||||||||    
T  9660136 gcaaaaaagtaaattactcgtgtacctcagctttatgcaatgtgtcaacagcaattctc 9660194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 28342515 - 28342460
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    ||||||||||||||||||  |||| || | |||||| |||||||||||||||||||    
T  28342515 gcaaaaacgtaaattacttatgtgtcttagccttatgcaatgtgtcaacaacaatt 28342460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 15488232 - 15488282
Alignment:
Q  28 taaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||  |||| | ||||||||| |||||||||||||||||||||||    
T  15488232 taaattactaatgtgacacaaccttatgcaatgtgtcaacaacaattctca 15488282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 23346773 - 23346715
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||| | ||||||||||| | |||||||||  ||||||| |||||||||||||    
T  23346773 gcaaaaacgtcatttactcgtgtggcacaaccttatcaaatgtgtaaacaacaattctc 23346715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 82343 - 82396
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaat 73  Q
    ||||||||||  ||||||||||| |  |||||||| ||||||||||||||||||    
T  82343 caaaaacgtattttactcgtgtgacataaccttatgcaatgtgtcaacaacaat 82396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 1262 - 1320
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| || |||||||||    
T  1262 caaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtcagcagcaattctca 1320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 7796653 - 7796595
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||||||||||||||||||| ||| || ||||||||||||| ||||||||    
T  7796653 gcaaaaacgtaaattactcgtgtgcctcagcctaatgcaatgtgtcaacatcaattctc 7796595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 18310102 - 18310160
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||  ||||| |||||||||| |||||| ||||||||||||||||||||||    
T  18310102 gcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 18310160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 31094555 - 31094497
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||| ||||||||||||||||||| | |||||| |||||| |||||||||||||||    
T  31094555 gcaaaaatgtaaattactcgtgtgcctaagccttatgcaatgtatcaacaacaattctc 31094497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 25877612 - 25877555
Alignment:
Q  21 aaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||  ||||||||||| | ||||||||| |||||||||||||||||||||||    
T  25877612 aaaaacgtattttactcgtgtgacacaaccttatgcaatgtgtcaacaacaattctca 25877555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 38407190 - 38407133
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||||||||||||||||| |||||||||  ||||||  |||||||||||||    
T  38407190 caaaaacgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaattctc 38407133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 3603228 - 3603288
Alignment:
Q  18 agcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||||||  |||||  ||||||||| |||||| |||||||||||||||||||||||    
T  3603228 agcaaaaacgtattttacttatgtgcctcagccttatgcaatgtgtcaacaacaattctca 3603288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 4204290 - 4204349
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    ||||||||||||||||||| ||||| |||||| |||||||| |||||| | |||||||||    
T  4204290 gcaaaaacgtaaattactcatgtgcttcaaccatatacaatatgtcaatagcaattctca 4204349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 8680331 - 8680382
Alignment:
Q  27 gtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||||||||||||| | || |||||| |||||||||||||||||||||||    
T  8680331 gtaaattactcgtgtgacacagccttatgcaatgtgtcaacaacaattctca 8680382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 20200229 - 20200287
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||  ||| | |||||||||| |||||| ||||||||||||||||||||||    
T  20200229 gcaaaaacgtattttatttgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 20200287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 30887440 - 30887496
Alignment:
Q  18 agcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    ||||||||||||||||||||||||||| |||| ||||  ||||||  ||||||||||    
T  30887440 agcaaaaacgtaaattactcgtgtgccacaacgttatcaaatgtgggaacaacaatt 30887496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 1397431 - 1397486
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 74  Q
    ||||||| |||||||||||||||||| |||||||||  ||||||  ||||||||||    
T  1397431 gcaaaaatgtaaattactcgtgtgccacaaccttatcaaatgtgggaacaacaatt 1397486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 20192345 - 20192286
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctca 78  Q
    |||||| ||||  ||||| |||||||||| ||||||  ||||||||||||||||||||||    
T  20192345 gcaaaatcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattctca 20192286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 26366867 - 26366822
Alignment:
Q  32 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||||||| |||| |||||| |||||| |||||||||||||||    
T  26366867 ttactcgtgtgtctcagccttatgcaatgtatcaacaacaattctc 26366822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 7801069 - 7801125
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattct 76  Q
    ||||||||||||||| ||||||| || | |||||| ||||||||||| | |||||||    
T  7801069 caaaaacgtaaattattcgtgtgtcttatccttatgcaatgtgtcaaaagcaattct 7801125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 33995242 - 33995282
Alignment:
Q  32 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaa 72  Q
    ||||| |||||||||||||||||| ||| ||||||||||||    
T  33995242 ttacttgtgtgcctcaaccttataaaatatgtcaacaacaa 33995282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 25943 - 25886
Alignment:
Q  20 caaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  25943 caaaaacataaattactcgtatgcctcagccttatgcaatgtgtcaacaacaattctc 25886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 5265 - 5218
Alignment:
Q  30 aattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||    
T  5265 aattactcgtgtgcctcagccttatacaatgtgtcaacagcaattctc 5218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 20196 - 20252
Alignment:
Q  21 aaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||||||| |||| |||||| |||||||| |||| ||||||||    
T  20196 aaaaacgtaaattactcgtgtgtctcagccttatgcaatgtgtaaacatcaattctc 20252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 814 - 779
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttat 54  Q
    |||||||||||||||||||||||||| |||||||||    
T  814 gcaaaaacgtaaattactcgtgtgccacaaccttat 779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 18023 - 17965
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||||||||||| |||| ||||  ||||||  |||| ||||||||    
T  18023 gcaaaaacgtaaattactcgtgtgccacaactttatcaaatgtgggaacatcaattctc 17965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 54821 - 54879
Alignment:
Q  19 gcaaaaacgtaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    |||||||||||||||||||||||||| |||| ||||  ||||||  |||| ||||||||    
T  54821 gcaaaaacgtaaattactcgtgtgccacaactttatcaaatgtgggaacatcaattctc 54879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 3865 - 3820
Alignment:
Q  32 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 77  Q
    ||||| ||||||||||||||||| |||| |||||||| ||||||||    
T  3865 ttacttgtgtgcctcaaccttatccaatttgtcaacatcaattctc 3820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University