View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9479_low_3 (Length: 458)

Name: NF9479_low_3
Description: NF9479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9479_low_3
NF9479_low_3
[»] chr3 (3 HSPs)
chr3 (134-442)||(52098723-52099038)
chr3 (16-54)||(52099110-52099148)
chr3 (143-194)||(30174411-30174462)
[»] chr5 (2 HSPs)
chr5 (136-241)||(10548168-10548270)
chr5 (136-186)||(20319537-20319587)
[»] chr7 (2 HSPs)
chr7 (150-240)||(47762050-47762137)
chr7 (171-234)||(25998373-25998433)
[»] chr1 (9 HSPs)
chr1 (143-235)||(11398283-11398372)
chr1 (137-235)||(18136416-18136512)
chr1 (150-235)||(52946195-52946277)
chr1 (150-215)||(52935169-52935234)
chr1 (150-215)||(52942804-52942869)
chr1 (143-235)||(31230344-31230433)
chr1 (16-49)||(18136560-18136593)
chr1 (137-186)||(41956096-41956145)
chr1 (180-235)||(52938563-52938615)
[»] scaffold0590 (2 HSPs)
scaffold0590 (136-235)||(5021-5119)
scaffold0590 (138-235)||(7701-7795)
[»] chr4 (2 HSPs)
chr4 (150-235)||(40225492-40225574)
chr4 (136-186)||(5373891-5373941)
[»] chr2 (1 HSPs)
chr2 (146-235)||(42735262-42735350)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 134 - 442
Target Start/End: Complemental strand, 52099038 - 52098723
Alignment:
Q  134 taacacatattccatgcttatttccttgacttttcttat-------atttataagggtccatattcctattttctataatgtcccttcttctaactctaa 226  Q
    |||||||||||||||||||||||| ||||| ||||||||       ||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  52099038 taacacatattccatgcttatttctttgacctttcttatttcttatatttataagggtctatattcctattttctataatgtcctttcttctaactctaa 52098939  T
Q  227 gactcattagagtatgaggccaacaatattatatttatcaatgtaaatctgtcagtccgatgtatattgatattaattgtcttctttccatgtattttaa 326  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52098938 gactcattacagtatgaggtcaacaatattatatttatcaatgtaaatgtgtcagtccgatgtatattgatattaattgtcttctttccatgtattttaa 52098839  T
Q  327 ttaacannnnnnnnnnnnnnnnnngacgagagaaggattgggattcataaacatatctgtttagtcaattaagtatttatatttaactagtttctatcaa 426  Q
    ||||||                  |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  52098838 ttaacatttttttttttgttttttgacgagagaaggattgggattcataaacatgtatgtttagtcaattaagtatttatatttaactagtttctatcaa 52098739  T
Q  427 tttgatccttatattt 442  Q
    ||||||||||||||||    
T  52098738 tttgatccttatattt 52098723  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 52099148 - 52099110
Alignment:
Q  16 aaggaggaatacaaccaattagcaagtaaaataactatt 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  52099148 aaggaggaatacaaccaattagcaagtaaaataactatt 52099110  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 30174411 - 30174462
Alignment:
Q  143 ttccatgcttatttccttgacttttcttatatttataagggtccatattcct 194  Q
    ||||||||||||||||||| |||||||  ||||||||||| |||||||||||    
T  30174411 ttccatgcttatttccttggcttttctcttatttataaggatccatattcct 30174462  T

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Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 10548270 - 10548168
Alignment:
Q  136 acacatattccatgcttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttcttctaactctaagactcatta 235  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||||| ||   ||||||||||||||||||||||    
T  10548270 acacatattccatacttatttccttggcttttctcatatttataaaggtccatattcctattttccataatgccc---cttctaactctaagactcatta 10548174  T
Q  236 gagtat 241  Q
     |||||    
T  10548173 cagtat 10548168  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 20319537 - 20319587
Alignment:
Q  136 acacatattccatgcttatttccttgacttttcttatatttataagggtcc 186  Q
    ||||||||| |||||||||||||| |||||||||  |||||||||||||||    
T  20319537 acacatatttcatgcttatttcctggacttttctcttatttataagggtcc 20319587  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 47762137 - 47762050
Alignment:
Q  150 cttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttcttctaactctaagactcattagagta 240  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| ||   |||||||||||||||||||||| ||||    
T  47762137 cttatttccttggcttttctcatatttataagggtccatattcctattttccataatgccc---cttctaactctaagactcattacagta 47762050  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 25998373 - 25998433
Alignment:
Q  171 atatttataagggtccatattcctattttctataatgtcccttcttctaactctaagactcatt 234  Q
    ||||||||| ||||| |||||||||||||| ||||||   | ||||||||||||| ||||||||    
T  25998373 atatttatacgggtctatattcctattttccataatg---catcttctaactctatgactcatt 25998433  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 11398283 - 11398372
Alignment:
Q  143 ttccatgcttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttcttctaactctaagactcatta 235  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||   |  ||||||||||||||||||||||    
T  11398283 ttccatccttatttccttggcttttctcatatttataagggtccatattcctattttccataatg---ccacttctaactctaagactcatta 11398372  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 18136512 - 18136416
Alignment:
Q  137 cacatattccatgcttatttccttgactttt-cttatatttataagggtccatattcctattttctataatgtcccttcttctaactctaagactcatta 235  Q
    |||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||||||| | |||||| ||   ||||||||||||||||||||||    
T  18136512 cacatatttcatgcttatttccttggctttttctcatatttataagggtccatattcctatttcccataatgccc---cttctaactctaagactcatta 18136416  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 52946277 - 52946195
Alignment:
Q  150 cttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttcttctaactctaagactcatta 235  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||| ||   ||||||||||||||||||||||    
T  52946277 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccc---cttctaactctaagactcatta 52946195  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 52935234 - 52935169
Alignment:
Q  150 cttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttct 215  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||| |||||||    
T  52935234 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttct 52935169  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 52942869 - 52942804
Alignment:
Q  150 cttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttct 215  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||| |||||||    
T  52942869 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttct 52942804  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 31230344 - 31230433
Alignment:
Q  143 ttccatgcttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttcttctaactctaagactcatta 235  Q
    ||||||||||||| | |||  |||||| |||||||||||||||||||||||||||| | |||| | ||   ||||||||||||||||||||||    
T  31230344 ttccatgcttattccattggtttttctcatatttataagggtccatattcctatttcccataacgccc---cttctaactctaagactcatta 31230433  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 18136593 - 18136560
Alignment:
Q  16 aaggaggaatacaaccaattagcaagtaaaataa 49  Q
    ||||||||||||||||||||||||||||||||||    
T  18136593 aaggaggaatacaaccaattagcaagtaaaataa 18136560  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 41956145 - 41956096
Alignment:
Q  137 cacatattccatgcttatttccttgacttttcttatatttataagggtcc 186  Q
    |||| ||| ||||| ||||||||||||||||||  |||||||||||||||    
T  41956145 cacacatttcatgcctatttccttgacttttctcttatttataagggtcc 41956096  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 52938615 - 52938563
Alignment:
Q  180 agggtccatattcctattttctataatgtcccttcttctaactctaagactcatta 235  Q
    ||||||||||||||||||| | |||||| ||   ||||||||||||||||||||||    
T  52938615 agggtccatattcctatttcccataatgccc---cttctaactctaagactcatta 52938563  T

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Target: scaffold0590 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 5021 - 5119
Alignment:
Q  136 acacatattccatgcttatttccttgacttttcttatatt--tataagggtccatattcctattttctataatgtcccttcttctaactctaagactcat 233  Q
    ||||||||| |||||||||||||||| ||||||| |||||  ||||||||||||||||||||||| | |||||| ||   ||||||||||||||||||||    
T  5021 acacatatttcatgcttatttccttggcttttctcatatttatataagggtccatattcctatttcccataatgccc---cttctaactctaagactcat 5117  T

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Target: scaffold0590; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 7701 - 7795
Alignment:
Q  138 acatattccatgcttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttcttctaactctaagactcatta 235  Q
    ||||||| ||||||||||| ||||| ||||||  ||||||||||||| |||||||||||||| | ||||    ||| ||||| |||||||||||||||    
T  7701 acatatttcatgcttattttcttgatttttctcgtatttataagggttcatattcctattttttttaat---actttttctagctctaagactcatta 7795  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 40225492 - 40225574
Alignment:
Q  150 cttatttccttgacttttcttatatttataagggtccatattcctattttctataatgtcccttcttctaactctaagactcatta 235  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||||||| | |||||| ||   ||||||||||||||||||||||    
T  40225492 cttatttccttggcttttctcatatttattagggtccatattcctatttcccataatgccc---cttctaactctaagactcatta 40225574  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 5373891 - 5373941
Alignment:
Q  136 acacatattccatgcttatttccttgacttttcttatatttataagggtcc 186  Q
    |||||| || ||||||||||||||||||||||||  |||||||||||||||    
T  5373891 acacatttttcatgcttatttccttgacttttctcttatttataagggtcc 5373941  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 42735350 - 42735262
Alignment:
Q  146 catgcttatttccttgacttttcttatatttata--agggtccatattcctattttctataatgtcccttcttctaactctaagactcatta 235  Q
    |||||||||||||||| ||||||| |||||||||  ||||||||||||||||||| | |||||| ||   ||||||||||||||||||||||    
T  42735350 catgcttatttccttgccttttctcatatttataagagggtccatattcctatttcccataatgccc---cttctaactctaagactcatta 42735262  T

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