View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9479_low_4 (Length: 438)
Name: NF9479_low_4
Description: NF9479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9479_low_4 |
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| [»] scaffold0062 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 257 - 422
Target Start/End: Complemental strand, 7644724 - 7644561
Alignment:
| Q |
257 |
gtgcctgcattattcaaaatttctgaatccgcagacattaagatgatccacttgcaatgaaaagaacaaacaagaggaaccactttcctctccaaaaacg |
356 |
Q |
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| T |
7644724 |
gtgcctgcattattcaaaatttctggctccggagacactaagatgacccacttgcaatgaaaagaacaaacaagaggaaccactttcctctccaaaaacg |
7644625 |
T |
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| Q |
357 |
tttgtgaagattttaataatgacaaattgtaaaacaccacatatcgatgccttcttgttggtttat |
422 |
Q |
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| T |
7644624 |
tttgtgaagattttaataatgacaaattataaaacaccac--attgatgccttcttgttggtttat |
7644561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 7644901 - 7644848
Alignment:
| Q |
31 |
tactatatagatcatcaagaatgagttgtg-aatcacataagagattaatattt |
83 |
Q |
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| T |
7644901 |
tactatatagatgatcaagaatgagttgtgaaatcacataagagattaatattt |
7644848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 7644809 - 7644768
Alignment:
| Q |
127 |
gattgaaaatgagaaaaacaatcaatatttctaaaaaccgac |
168 |
Q |
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| T |
7644809 |
gattgaaaatgagaaaaacatttaatatttctaaaaaccgac |
7644768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 27768 - 27800
Alignment:
| Q |
6 |
atgttaaacacattttgttccaacatactatat |
38 |
Q |
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| T |
27768 |
atgttaaacacattttgttccaacatattatat |
27800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 14392687 - 14392659
Alignment:
| Q |
6 |
atgttaaacacattttgttccaacatact |
34 |
Q |
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| T |
14392687 |
atgttaaacacattttgttccaacatact |
14392659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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