View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9479_low_8 (Length: 307)
Name: NF9479_low_8
Description: NF9479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9479_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 59 - 290
Target Start/End: Original strand, 15645647 - 15645879
Alignment:
| Q |
59 |
tctaaccaatggtttatccttcctttctcaacaagatcttgtgaaaatttgaatgtctgttaaaatcaaaggatggacttgcg-caggtctatacccttt |
157 |
Q |
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| T |
15645647 |
tctaaccaatagtttatccttcctttctcaacaagattttatgaaaatttgaatgcttgttaaaatcaaaggatggacttgccacaggtctatacccttt |
15645746 |
T |
|
| Q |
158 |
aaccaatctatttgacttgtatcttaatccacatgcattgcataaagtatttttccccaaaggacccaatctccattgagttgtgtatttggtctcacaa |
257 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15645747 |
aaccaatcgatttgacttgtatcttaatccacatgcattgcataaagtatttttccccaaaggacccaatctccattgagttgtgtatttggtctcacaa |
15645846 |
T |
|
| Q |
258 |
tgactgcaacttctctctctatacatatctatg |
290 |
Q |
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|||||||||||||||||| |||| ||||||||| |
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| T |
15645847 |
tgactgcaacttctctctttatatatatctatg |
15645879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 61 - 289
Target Start/End: Original strand, 15596026 - 15596258
Alignment:
| Q |
61 |
taaccaatggtttatccttcctttctcaacaagatcttgtgaaaatttgaatgtctgttaaaatcaaaggatggacttg-cgcaggtctataccctttaa |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
15596026 |
taaccaatggtttatccttcctttctcaacaagatcttgtgaaaatttgaatgtgtgttaaaatcaaaggatggacttgccgcaggtctatacccttgaa |
15596125 |
T |
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| Q |
160 |
ccaatctatttgacttgtatcttaatccacatgcattgcataaagtatttttccccaaaggacccaatctccattgagttg---tgtatttggtctcaca |
256 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| | | | |||||||||||| |
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| T |
15596126 |
ccaatctatttgacttgtatcgtaatccacatgcattgcataaagtattttcccccaaaggacctgacctccattgagtagtactctctttggtctcaca |
15596225 |
T |
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| Q |
257 |
atgactgcaacttctctctctatacatatctat |
289 |
Q |
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| T |
15596226 |
atgactgtaacttctctctatatacatatctat |
15596258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 143 - 276
Target Start/End: Original strand, 15587160 - 15587293
Alignment:
| Q |
143 |
aggtctataccctttaaccaatctatttgacttgtatcttaatccacatgcattgcataaagtatttttccccaaaggacccaatctccattgagttgtg |
242 |
Q |
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||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| || |
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| T |
15587160 |
aggtctataccctttaaccaatccatttaacttgtatcgtaatccacatgcattgcacaaactatttttccccaaaggaccttccctccattgagtagtc |
15587259 |
T |
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| Q |
243 |
tatttggtctcacaatgactgcaacttctctctc |
276 |
Q |
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| T |
15587260 |
tctttcgtctcacaatggctgcaacttctctctc |
15587293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 143 - 276
Target Start/End: Original strand, 15637066 - 15637199
Alignment:
| Q |
143 |
aggtctataccctttaaccaatctatttgacttgtatcttaatccacatgcattgcataaagtatttttccccaaaggacccaatctccattgagttgtg |
242 |
Q |
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||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| ||| |||| |||||||||||||| ||||||||||| || |
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| T |
15637066 |
aggtctataccctttaaccaatccatttaacttgtatcgtaatccacatgcattgcacaaactattcttccccaaaggaccttccctccattgagtagtc |
15637165 |
T |
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| Q |
243 |
tatttggtctcacaatgactgcaacttctctctc |
276 |
Q |
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| T |
15637166 |
tctttggtctcacaatggctgcaacttctatctc |
15637199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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