View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9479_low_9 (Length: 305)
Name: NF9479_low_9
Description: NF9479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9479_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 28232028 - 28232321
Alignment:
| Q |
1 |
atatggcaataaggatgtcacaaaagaacttgtttgtgcaatgtacattaattaaatgctttctagttttctagttaaatgaccatgg----gctattgc |
96 |
Q |
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| T |
28232028 |
atatggcaataaggatgtcacaaaagaacttgtttgtgaaatgtacattaattaaatgctttctagttttctagttaaatgaccatgtttttgcttttgc |
28232127 |
T |
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| Q |
97 |
ttttgctttcagttttagtttcacttctattctataggtaatcagctgccaagtgagtggataacaattatgtttaatgtattctaattttaataatgtc |
196 |
Q |
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| T |
28232128 |
ttttgcttttagttttagtttcacttctattctataggtaatcagctgccaagtgagtggataacaattgtgtttaatgtattctaattttaataatgtc |
28232227 |
T |
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| Q |
197 |
tgaatttgggcaatatatatgtatgtccttcaaacagataggaggtatccatgtttcttgttttatgctctttgattatataaatatgcctatg |
290 |
Q |
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| T |
28232228 |
tgaatttgggcaatatatatgtatgtccttcaaacagataggaggtatccatgtttcttgttttatgctctttgattatataaatatgcctatg |
28232321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 28239904 - 28239961
Alignment:
| Q |
233 |
gataggaggtatccatgtttcttgttttatgctctttgattatataaatatgcctatg |
290 |
Q |
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| T |
28239904 |
gataggagatactcatgtttcttgttttatgctctttgattatataaatatgcctatg |
28239961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28239724 - 28239773
Alignment:
| Q |
1 |
atatggcaataaggatgtcacaaaagaacttgtttgtgcaatgtacatta |
50 |
Q |
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| T |
28239724 |
atatggcaacaaggatggcacaaaagaacttgtttgtgcaatgtagatta |
28239773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 47569838 - 47569882
Alignment:
| Q |
246 |
catgtttcttgttttatgctctttgattatataaatatgcctatg |
290 |
Q |
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| T |
47569838 |
catgtttcttattttatgctctttgattatataaatacgcctatg |
47569882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 28327020 - 28327072
Alignment:
| Q |
220 |
tgtccttcaaacagataggaggtatccatgtttcttgttttatgctctttgattat |
275 |
Q |
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| T |
28327020 |
tgtccttcaaacagatagg---tacacatgtttcttgttttatgctctttgattat |
28327072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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