View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9480_high_1 (Length: 439)
Name: NF9480_high_1
Description: NF9480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9480_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 46765830 - 46765414
Alignment:
| Q |
18 |
aaatatgccataaacaggtcggtggtctgaaaatcttgattcaccgcgaacataagacaattgatggagtccttctccataccatagaatacggtcacac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46765830 |
aaatatgccataaacaggtcggtggtctgaaaatcttgattcaccgcgaacataagacaattgatggagtccttctccataccatagaatacggtcacac |
46765731 |
T |
|
| Q |
118 |
ctataaaaagaaaaatgttcatgtcttcgtaggttgtaacagtttaataaaattatatcatatatcatgaaacatacttcattttataaaatcctattag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46765730 |
ctataaaaagaaaaatgttcatgtcttcgtaggttgtaacagtttaataaaattatatcatatatcatgaaacatacttcattttataaaatcctattag |
46765631 |
T |
|
| Q |
218 |
gtgatgtgataatcttaccaagcaggtgttctccttttttccttggggtgcatatcatctcctgagtatcgatctgaattagttgaatatttgtaagttg |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46765630 |
gtgatgtgataatcttaccaagcaggtgttctccttttttccttggggtgcatatcatctcctgagtatcgatctgaattagttgaatatttgtaagttg |
46765531 |
T |
|
| Q |
318 |
gaggaaaatatatcttcccttcgttccatcccacaaaagcgcggcctcttttttgctctattctcaactgccatgagtgtcaatagttaggattattatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46765530 |
gaggaaaatatatcttcccttcgttccatcccacaaaagcgcggcctcttttttgctctattctcaactgccatgagtgtcaatagttaggattattatg |
46765431 |
T |
|
| Q |
418 |
taacttaaacaccaaac |
434 |
Q |
| |
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||||||||||| ||||| |
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| T |
46765430 |
taacttaaacagcaaac |
46765414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 223 - 390
Target Start/End: Complemental strand, 1085981 - 1085814
Alignment:
| Q |
223 |
gtgataatcttaccaagcaggtgttctccttttttccttggggtgcatatcatctcctgagtatcgatctgaattagttgaatatttgtaagttggagga |
322 |
Q |
| |
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||||| |||||||||||||||||||| |||||| ||||| || |||||||||||||| | || | ||||||||| |||||||| || || |||||||| |
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| T |
1085981 |
gtgatgatcttaccaagcaggtgttcgccttttctcctttggatgcatatcatctccagcatacctatctgaattggttgaatacttatatgttggaggg |
1085882 |
T |
|
| Q |
323 |
aaatatatcttcccttcgttccatcccacaaaagcgcggcctcttttttgctctattctcaactgcca |
390 |
Q |
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||||| ||||||||||| |||||||| |||| || ||||||| ||||||||||||||||||||||| |
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| T |
1085881 |
aaataaatcttcccttctttccatcctgcaaatgcacggcctcgcttttgctctattctcaactgcca |
1085814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 1086168 - 1086064
Alignment:
| Q |
18 |
aaatatgccataaacaggtcggtggtctgaaaatcttgattcaccgcgaacataagacaattgatggagtccttctccataccatagaatacggtcacac |
117 |
Q |
| |
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||||| ||||||||| |||| ||||||||||||||| ||||| ||||| || ||||| | |||| | || |||||||||| ||| | ||||||||||||| |
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| T |
1086168 |
aaataagccataaaccggtctgtggtctgaaaatctcgattctccgcgtacgtaagatatttgacgtagaccttctccatgccacaaaatacggtcacac |
1086069 |
T |
|
| Q |
118 |
ctata |
122 |
Q |
| |
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||||| |
|
|
| T |
1086068 |
ctata |
1086064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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