View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9480_low_13 (Length: 250)

Name: NF9480_low_13
Description: NF9480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9480_low_13
NF9480_low_13
[»] chr1 (6 HSPs)
chr1 (8-250)||(13272369-13272611)
chr1 (8-221)||(12963087-12963300)
chr1 (10-250)||(13086890-13087130)
chr1 (10-250)||(13243723-13243963)
chr1 (29-250)||(19278365-19278586)
chr1 (8-250)||(13080062-13080304)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 13272611 - 13272369
Alignment:
Q  8 ttggtgttagtattgtaaatctggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaagggaaaacttttgagacatcccttcg 107  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  13272611 ttggtgttagtattgtaaatctggattccaatgaatggaagcaagaaaggactattcttcattcattgcttaaagcaaaaacttttgagacatcccttcg 13272512  T
Q  108 acaaaacattcaaaagaagatagaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtacttgatttacaagatattattgaaagg 207  Q
    ||||||||||||||||||  |||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13272511 acaaaacattcaaaagaaactagaaagttgtctattaccatttcttgatcatgcatcaaaaggtgtacacgtacttgatttacaagatattattgagagg 13272412  T
Q  208 ttcacctttgatattacttgtaattttttatttggatttgatc 250  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13272411 ttcacctttgatattacttgtaattttttatttggatttgatc 13272369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 12963087 - 12963300
Alignment:
Q  8 ttggtgttagtattgtaaatctggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaagggaaaacttttgagacatcccttcg 107  Q
    ||||| ||||| || ||||| ||||||||||||| ||||||||||| ||||| || |||||||||||||||||| |||||| |||| ||||||||||||     
T  12963087 ttggtattagtcttataaatttggattccaatgattggaaacaagagaggacaatacttcattcattgctcaaaaggaaaagttttaagacatcccttca 12963186  T
Q  108 acaaaacattcaaaagaagatagaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtacttgatttacaagatattattgaaagg 207  Q
    ||||| ||||||||||||| |||| ||||| || ||||||||| | ||||||||| |||||||| |||| ||||| ||||||||||||||| |||| |||    
T  12963187 acaaatcattcaaaagaagctagagagttgtctattaccatttcttgatcatgcaacaaaaggtttacaagtactcgatttacaagatattcttgagagg 12963286  T
Q  208 ttcacctttgatat 221  Q
    |||||||| |||||    
T  12963287 ttcaccttcgatat 12963300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 13087130 - 13086890
Alignment:
Q  10 ggtgttagtattgtaaatctggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaagggaaaacttttgagacatcccttcgac 109  Q
    |||||| ||||| ||||| |||||| | | |||||||||||||| |||||  | ||||||||||||||||||||||||| |||||||| |||| ||| ||    
T  13087130 ggtgttggtattttaaatttggatttcgaagaatggaaacaagagaggacactacttcattcattgctcaaagggaaaagttttgagatatcctttcaac 13087031  T
Q  110 aaaacattcaaaagaagatagaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtacttgatttacaagatattattgaaaggtt 209  Q
    ||||||||||||||||| |||| | || ||| |||| |||| | ||||||||||| ||| ||||||| ||||||||||||||||||||| |||| |||||    
T  13087030 aaaacattcaaaagaagctagagaatttcctattacgatttcttgatcatgcatccaaaagtgtacaggtacttgatttacaagatattcttgagaggtt 13086931  T
Q  210 cacctttgatattacttgtaattttttatttggatttgatc 250  Q
     |||||||||||||| || | ||| || |||||||||||||    
T  13086930 tacctttgatattacatgcattttgttgtttggatttgatc 13086890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 13243723 - 13243963
Alignment:
Q  10 ggtgttagtattgtaaatctggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaagggaaaacttttgagacatcccttcgac 109  Q
    |||||| ||||| | ||| |||||||||| |||||| ||||||||||| |  | ||||||||||||||||||   ||||  ||||||| || |  || ||    
T  13243723 ggtgttggtattttcaatttggattccaaggaatgggaacaagaaagggcactacttcattcattgctcaaaaccaaaaactttgagatattctatcaac 13243822  T
Q  110 aaaacattcaaaagaagatagaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtacttgatttacaagatattattgaaaggtt 209  Q
    ||||||||||||||||  |||| | |||||| ||||||||| | ||||||||||| ||||  ||| | |||||||||||||||||| || |||| |||||    
T  13243823 aaaacattcaaaagaaactagagaattgcctattaccatttcttgatcatgcatccaaagaagtaaaagtacttgatttacaagatgttcttgagaggtt 13243922  T
Q  210 cacctttgatattacttgtaattttttatttggatttgatc 250  Q
     |||||||||||| |||| | |||||| |||||||| ||||    
T  13243923 tacctttgatatttcttgcacttttttttttggattcgatc 13243963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 19278365 - 19278586
Alignment:
Q  29 tggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaagggaaaacttttgagacatcccttcgacaaaacattcaaaagaagat 128  Q
    ||||||||||||||||||||||||||||| |  |  |||||||||||||||||   ||||   |||||| || |  || ||||||||||||||||||| |    
T  19278365 tggattccaatgaatggaaacaagaaagggcactatttcattcattgctcaaaaacaaaaacattgagatattctatcaacaaaacattcaaaagaagct 19278464  T
Q  129 agaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtacttgatttacaagatattattgaaaggttcacctttgatattacttgt 228  Q
    ||| | |||  | ||||||||| | ||||||||||| ||||  ||| | |  ||||||||||||||| ||||||| ||||| |||||||||||||||||     
T  19278465 agagaattgtttgttaccatttcttgatcatgcatccaaagaagtaaaaggtcttgatttacaagatgttattgagaggtttacctttgatattacttgc 19278564  T
Q  229 aattttttatttggatttgatc 250  Q
    | ||||||||||||||| ||||    
T  19278565 atttttttatttggattcgatc 19278586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 13080062 - 13080304
Alignment:
Q  8 ttggtgttagtattgtaaatctggattccaatgaatggaaacaagaaaggactattcttcattcattgctcaaagggaaaacttttgagacatcccttcg 107  Q
    |||||||| ||||| | ||| | ||||| ||||||||||||||||| ||  |  |  ||||||||||||||||| ||||||  ||||||| |  |||||     
T  13080062 ttggtgttggtattttcaatttagattctaatgaatggaaacaagagagagcattgtttcattcattgctcaaaaggaaaagctttgagatactccttca 13080161  T
Q  108 acaaaacattcaaaagaagatagaaagttgccttttaccatttttcgatcatgcatcaaaaggtgtacacgtacttgatttacaagatattattgaaagg 207  Q
     |||  ||||  ||| ||| |||| | || ||| ||||||||| | ||||||||||| ||||| |||||  |||||||||||||||||||| |||| |||    
T  13080162 tcaatgcattagaaataagttagagattttcctattaccatttcttgatcatgcatccaaaggagtacaaatacttgatttacaagatattcttgagagg 13080261  T
Q  208 ttcacctttgatattacttgtaattttttatttggatttgatc 250  Q
    ||||||||||| |||| ||| | || | |||||||||||||||    
T  13080262 ttcacctttgacattatttgcacttctgtatttggatttgatc 13080304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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