View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9480_low_15 (Length: 240)

Name: NF9480_low_15
Description: NF9480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9480_low_15
NF9480_low_15
[»] chr1 (9 HSPs)
chr1 (1-223)||(35362477-35362698)
chr1 (106-222)||(28093575-28093691)
chr1 (88-208)||(38669509-38669629)
chr1 (85-211)||(13642836-13642961)
chr1 (152-209)||(8772544-8772601)
chr1 (86-200)||(40707719-40707833)
chr1 (93-208)||(51127109-51127224)
chr1 (86-208)||(3289602-3289724)
chr1 (150-208)||(9857303-9857360)
[»] chr6 (6 HSPs)
chr6 (86-223)||(6138555-6138692)
chr6 (150-223)||(15055920-15055993)
chr6 (85-211)||(22298316-22298441)
chr6 (148-210)||(30591366-30591428)
chr6 (151-219)||(22292823-22292891)
chr6 (88-208)||(16166201-16166322)
[»] chr8 (5 HSPs)
chr8 (93-223)||(29909274-29909404)
chr8 (80-208)||(16576637-16576765)
chr8 (93-223)||(6628413-6628543)
chr8 (147-223)||(6636212-6636288)
chr8 (152-208)||(29443057-29443113)
[»] chr7 (10 HSPs)
chr7 (86-211)||(9626302-9626427)
chr7 (105-223)||(3525458-3525576)
chr7 (90-222)||(26425763-26425895)
chr7 (93-208)||(12218623-12218738)
chr7 (86-208)||(5738539-5738661)
chr7 (89-211)||(27157062-27157184)
chr7 (152-210)||(3406170-3406228)
chr7 (106-201)||(9459242-9459337)
chr7 (149-210)||(4919709-4919770)
chr7 (152-203)||(21524258-21524309)
[»] chr4 (13 HSPs)
chr4 (86-211)||(13610819-13610944)
chr4 (86-210)||(31763232-31763356)
chr4 (80-208)||(34458660-34458788)
chr4 (86-208)||(53994608-53994730)
chr4 (103-223)||(50689878-50689998)
chr4 (152-210)||(19901527-19901585)
chr4 (151-208)||(15521760-15521817)
chr4 (95-208)||(23602422-23602535)
chr4 (95-208)||(47681628-47681741)
chr4 (152-203)||(38069171-38069221)
chr4 (113-200)||(47304565-47304652)
chr4 (86-208)||(43137082-43137204)
chr4 (133-208)||(7291377-7291452)
[»] chr2 (10 HSPs)
chr2 (93-222)||(5306060-5306189)
chr2 (86-210)||(34640503-34640627)
chr2 (150-208)||(40355565-40355623)
chr2 (86-208)||(30491111-30491233)
chr2 (86-223)||(38855093-38855230)
chr2 (157-210)||(41533442-41533495)
chr2 (150-223)||(42471856-42471929)
chr2 (83-131)||(12069142-12069190)
chr2 (160-208)||(38119984-38120032)
chr2 (133-208)||(38064469-38064544)
[»] chr3 (4 HSPs)
chr3 (93-218)||(54739133-54739258)
chr3 (88-203)||(53199949-53200064)
chr3 (86-210)||(50385106-50385230)
chr3 (155-201)||(44028268-44028314)
[»] chr5 (7 HSPs)
chr5 (86-208)||(34582982-34583104)
chr5 (113-210)||(5927191-5927288)
chr5 (148-208)||(16719706-16719766)
chr5 (106-194)||(40897011-40897099)
chr5 (153-208)||(10542335-10542390)
chr5 (87-203)||(12621863-12621979)
chr5 (150-203)||(31224242-31224295)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35362698 - 35362477
Alignment:
Q  1 tcggaacctcataaaatgtcgcaggagaagaggttggtcgtgagggacgatagtaatggtggtggtggaggacggtggtgggtaagggtggaaataggcc 100  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35362698 tcggaacctcagaaaatgtcaccggagaagaggttggtcgtgagggacgatagtaatggtggtggtggaggacggtggtgggtaagggtggaaataggcc 35362599  T
Q  101 aagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctat 200  Q
    |||||||||||||||||||| |||||||||||| ||||||||||  |||||||||||| |||||||||||||| | |||||||| |||||||||||||||    
T  35362598 aagccgctcgttaggggcctttggcccgacccattaaaagcccggcccagcctaactcatttaataaataggttagacatgagc-ttttaaaaagcctat 35362500  T
Q  201 taagttaaatgagctaggcttag 223  Q
    ||| |||||||||||||||||||    
T  35362499 taatttaaatgagctaggcttag 35362477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 28093575 - 28093691
Alignment:
Q  106 gctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagt 205  Q
    |||||| |||||||||||||||||||  || ||||| ||  ||  |||||||||||||||||| || |||||||||||||||||||||| |||||||| |    
T  28093575 gctcgtcaggggcctatggcccgacctgctgaaagctcggcccgacctaactcgtttaataaaaagttcaaacatgagctttttaaaaaacctattaatt 28093674  T
Q  206 taaatgagctaggctta 222  Q
    |||||||| ||||||||    
T  28093675 taaatgagttaggctta 28093691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 38669509 - 38669629
Alignment:
Q  88 gtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagcttt 187  Q
    |||| ||||||||| ||||||||| ||||||||||||   | || |||||||||||| ||| ||||| ||||||||||||||  ||||| | ||||||||    
T  38669509 gtgggaataggccaggccgctcgtcaggggcctatggtttggcctactaaaagcccggtccggcctagctcgtttaataaatgagtcaagcttgagcttt 38669608  T
Q  188 ttaaaaagcctattaagttaa 208  Q
    |||||||||||||||| ||||    
T  38669609 ttaaaaagcctattaatttaa 38669629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 211
Target Start/End: Complemental strand, 13642961 - 13642836
Alignment:
Q  85 agggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagc 184  Q
    ||||||| ||||||||| ||||||| ||||| | ||||||  ||||| ||| ||||| ||||||  ||||| | ||||||||||||||| || |||||||    
T  13642961 agggtgggaataggcca-gccgctcattaggagtctatggttcgacctactgaaagctcgatccgacctaatttgtttaataaataggttaagcatgagc 13642863  T
Q  185 tttttaaaaagcctattaagttaaatg 211  Q
    |||| ||||||| |||||| |||||||    
T  13642862 ttttcaaaaagcttattaatttaaatg 13642836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 8772601 - 8772544
Alignment:
Q  152 ctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaaa 209  Q
    ||||||||||||||||||  ||||| | |||||||||||||||||||||||| |||||    
T  8772601 ctaactcgtttaataaatgagtcaagcttgagctttttaaaaagcctattaatttaaa 8772544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 40707719 - 40707833
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| ||||||||| ||||| ||| ||||||||||||| || |  ||| ||||||||   | |||||||| ||||||| |||  ||||| | ||||||    
T  40707719 gggtgggaataggccaggccgcccgtcaggggcctatggctcggcttactgaaagcccggctcggcctaacttgtttaatgaatgagtcaagcttgagct 40707818  T
Q  186 ttttaaaaagcctat 200  Q
    ||||||||| |||||    
T  40707819 ttttaaaaaacctat 40707833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 51127224 - 51127109
Alignment:
Q  93 aataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaa 192  Q
    ||||||||| ||| ||||| ||||| ||||||| || || ||||| || ||  |   ||||||||||||||||||||  ||||| | | |||||||||||    
T  51127224 aataggccaggccactcgtcaggggtctatggctcggcctactaatagtccagtttggcctaactcgtttaataaatgtgtcaagcttaagctttttaaa 51127125  T
Q  193 aagcctattaagttaa 208  Q
    ||| ||||||| ||||    
T  51127124 aaggctattaatttaa 51127109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 3289724 - 3289602
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| ||||| ||| ||| | ||| ||||||||||||  ||||| ||||||| ||||   | | ||| ||||||||||||||  ||||| | | | ||    
T  3289724 gggtgggaatagaccaggccacccgtcaggggcctatggttcgacctactaaaaacccggcacggtctagctcgtttaataaatgagtcaagcttaatct 3289625  T
Q  186 ttttaaaaagcctattaagttaa 208  Q
    |||||||||||||||||| ||||    
T  3289624 ttttaaaaagcctattaatttaa 3289602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 9857360 - 9857303
Alignment:
Q  150 gcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaa 208  Q
    ||||||||||||||||||||  ||||| | ||||||||||||||| |||||||| ||||    
T  9857360 gcctaactcgtttaataaatgagtcaagcttgagctttttaaaaa-cctattaatttaa 9857303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 6138555 - 6138692
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| |||||| || |||| |||| |||||||||||  ||| || ||||||||| || ||  ||||||||||||||||||||||||||||||||||||    
T  6138555 gggtgggaataggtcaggccgttcgtcaggggcctatgatccggcctactaaaagctcggtctggcctaactcgtttaataaataggtcaaacatgagct 6138654  T
Q  186 ttttaaaaagcctattaagttaaatgagctaggcttag 223  Q
    |||||||||| ||||||| ||| |||||||||||||||    
T  6138655 ttttaaaaagtctattaatttacatgagctaggcttag 6138692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 15055993 - 15055920
Alignment:
Q  150 gcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaaatgagctaggcttag 223  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||| |||| ||||||    
T  15055993 gcctaactcgtttaataaataggtcaagcatgagctttttaaaaagtctaataatttaaatgggctaagcttag 15055920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 22298316 - 22298441
Alignment:
Q  85 agggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagc 184  Q
    ||||||| ||||||||| ||||||| ||||| | ||||||  ||||| ||| ||||| ||||||  ||||| | ||||||||||||||| || |||||||    
T  22298316 agggtgggaataggcca-gccgctcattaggagtctatggttcgacctactgaaagctcgatccgacctaatttgtttaataaataggttaagcatgagc 22298414  T
Q  185 tttttaaaaagcctattaagttaaatg 211  Q
    |||| ||||||| |||||| |||||||    
T  22298415 ttttcaaaaagcttattaatttaaatg 22298441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 30591366 - 30591428
Alignment:
Q  148 cagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaaat 210  Q
    ||||||| |||||||||||||| |||||||  |||||||||||||||||||||||| ||||||    
T  30591366 cagcctagctcgtttaataaatgggtcaaatttgagctttttaaaaagcctattaaattaaat 30591428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 22292823 - 22292891
Alignment:
Q  151 cctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaaatgagctaggc 219  Q
    ||||||| |||||||||| ||||||| ||||||||||| ||||||| |||||| ||||||| |||||||    
T  22292823 cctaacttgtttaataaacaggtcaagcatgagcttttcaaaaagcttattaatttaaatgggctaggc 22292891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 16166201 - 16166322
Alignment:
Q  88 gtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagc-tt 186  Q
    |||| ||||||||| ||||| ||| ||||||||||||| || || ||||||||| ||   | ||||| || |||||||||||  ||||| | ||||| ||    
T  16166201 gtgggaataggccaggccgcccgtcaggggcctatggctcggcctactaaaagctcggctcggcctagcttgtttaataaatgagtcaagcttgagcttt 16166300  T
Q  187 tttaaaaagcctattaagttaa 208  Q
    ||||||||||||||||| ||||    
T  16166301 tttaaaaagcctattaacttaa 16166322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 29909274 - 29909404
Alignment:
Q  93 aataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaa 192  Q
    ||||||||| ||||||||| ||||| |||||  ||| || |||||||| | ||  | ||||||||||||||||||||||||||| |||||||||||||||    
T  29909274 aataggccaggccgctcgtcaggggtctatgatccggcctactaaaagtctgactcggcctaactcgtttaataaataggtcaagcatgagctttttaaa 29909373  T
Q  193 aagcctattaagttaaatgagctaggcttag 223  Q
    || |||||||| ||||||| |||||||||||    
T  29909374 aatcctattaatttaaatgggctaggcttag 29909404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 16576765 - 16576637
Alignment:
Q  80 gggtaagggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaaca 179  Q
    ||||| |||||| ||||||||| | ||| ||| ||||||||||||| || || |||||||||||    ||||||||||||||||||||||  ||||| |     
T  16576765 gggtaggggtgggaataggccaggtcgcccgtcaggggcctatggctcggcctactaaaagccccgctcagcctaactcgtttaataaatgagtcaagct 16576666  T
Q  180 tgagctttttaaaaagcctattaagttaa 208  Q
    |||||||| ||||||||||||||| ||||    
T  16576665 tgagctttataaaaagcctattaatttaa 16576637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 6628543 - 6628413
Alignment:
Q  93 aataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaa 192  Q
    ||||||||| ||||||||| | |||  |||||| || || ||| ||||| ||  ||  ||| |||| |||||||||||||||||||||||||||||||||    
T  6628543 aataggccaggccgctcgtcaagggtatatggctcggcctactgaaagcacggcccgaccttactcatttaataaataggtcaaacatgagctttttaaa 6628444  T
Q  193 aagcctattaagttaaatgagctaggcttag 223  Q
    ||||||||||| ||||||   ||||||||||    
T  6628443 aagcctattaatttaaattgactaggcttag 6628413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 6636288 - 6636212
Alignment:
Q  147 ccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaaatgagctaggcttag 223  Q
    ||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||  | |||||||||    
T  6636288 ccagccttactcatttaataaataggtcaagcatgagctttttaaaaagcctattaatttaaattggttaggcttag 6636212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 29443113 - 29443057
Alignment:
Q  152 ctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaa 208  Q
    |||||||||||||||||| ||||||   ||| |||||||||||||||||||| ||||    
T  29443113 ctaactcgtttaataaatgggtcaagtttgaactttttaaaaagcctattaatttaa 29443057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 9626427 - 9626302
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| |||| |||| || ||| || |||||||||||||||| || ||||||||| ||  ||  |||||||||||||||||||||||||||||||||||    
T  9626427 gggtgggaataagccaggctgcttgtcaggggcctatggcccggcctactaaaagctcggcccgacctaactcgtttaataaataggtcaaacatgagct 9626328  T
Q  186 ttttaaaaagcctattaagttaaatg 211  Q
    ||||||||||| |||||| |||||||    
T  9626327 ttttaaaaagcttattaatttaaatg 9626302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 3525458 - 3525576
Alignment:
Q  105 cgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaag 204  Q
    ||||||| ||||| |||||| ||| || ||| ||||||||  || ||||||||||||||||||||||||||  |||||| ||||||||||| |||||||     
T  3525458 cgctcgtcaggggtctatggtccggcctactgaaagcccggcccggcctaactcgtttaataaataggtcaggcatgagatttttaaaaagtctattaat 3525557  T
Q  205 ttaaatgagctaggcttag 223  Q
    ||||||| | |||||||||    
T  3525558 ttaaatgggttaggcttag 3525576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 26425895 - 26425763
Alignment:
Q  90 ggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagcttttt 189  Q
    |||||||||| |  |||||||| ||||| |||||| ||| || ||| ||||| || ||  ||||||||||||||||||| ||||||| ||| ||||||||    
T  26425895 ggaaataggctagaccgctcgtcaggggtctatggtccggcctactgaaagctcggtctggcctaactcgtttaataaaaaggtcaagcattagcttttt 26425796  T
Q  190 aaaaagcctattaagttaaatgagctaggctta 222  Q
    ||||||| | |||| ||||||| || |||||||    
T  26425795 aaaaagcttgttaatttaaatgggccaggctta 26425763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 12218738 - 12218623
Alignment:
Q  93 aataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaa 192  Q
    ||||||||| ||||| ||| ||||||||||||| ||||| ||||||||| ||   | ||||| ||||||||||||||  ||||||| | |||||||||||    
T  12218738 aataggccaggccgcccgtcaggggcctatggctcgacctactaaaagctcggctcggcctatctcgtttaataaatgagtcaaacttaagctttttaaa 12218639  T
Q  193 aagcctattaagttaa 208  Q
    ||| ||||||| ||||    
T  12218638 aagactattaatttaa 12218623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 5738539 - 5738661
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| ||||||||| ||||||||| |||||||||||||  | || ||||||||  |    ||| |||||||||||||||||| |||||||  ||||||    
T  5738539 gggtgggaataggccaggccgctcgtcaggggcctatggcttggcctactaaaagttcagctcagtctaactcgtttaataaatgggtcaaatttgagct 5738638  T
Q  186 ttttaaaaagcctattaagttaa 208  Q
    |||||||||| ||||||| ||||    
T  5738639 ttttaaaaagtctattaatttaa 5738661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 27157062 - 27157184
Alignment:
Q  89 tggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttt 188  Q
    |||||||||| || | || |||| |||||||||||  ||  || ||| ||||  ||||||  ||||||||||||||||| | || ||||||| |||||||    
T  27157062 tggaaataggtcaggacgttcgtcaggggcctatgatccagcctactgaaagttcgatccgacctaactcgtttaataactcggccaaacataagctttt 27157161  T
Q  189 taaaaagcctattaagttaaatg 211  Q
    ||||||||||||||| |||||||    
T  27157162 taaaaagcctattaatttaaatg 27157184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 3406170 - 3406228
Alignment:
Q  152 ctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaaat 210  Q
    ||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||||||    
T  3406170 ctaactcatttaataaataggttaagcatgagctttttaaaaaacctattaatttaaat 3406228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 9459337 - 9459242
Alignment:
Q  106 gctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctatt 201  Q
    ||||||||| |||||||||| || || || |||||||||   | ||||| || |||||||||||  ||||| | ||||||||||||||||||||||    
T  9459337 gctcgttagaggcctatggctcgtcctacaaaaagcccggctcggcctagcttgtttaataaatgagtcaagcttgagctttttaaaaagcctatt 9459242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 4919709 - 4919770
Alignment:
Q  149 agcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaaat 210  Q
    |||||| ||||||||||| || | |||||| ||| |||||||||||||||||||| ||||||    
T  4919709 agcctagctcgtttaatagatggatcaaacttgaactttttaaaaagcctattaatttaaat 4919770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 21524309 - 21524258
Alignment:
Q  152 ctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaa 203  Q
    |||||||||||||||||||| | || ||| ||||||||||||||| ||||||    
T  21524309 ctaactcgtttaataaatagattaagcattagctttttaaaaagcatattaa 21524258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 211
Target Start/End: Original strand, 13610819 - 13610944
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| |||| |||| || ||| || |||||||||||||||| || ||||||||| ||  ||  |||||||||||||||||||||||||||||||||||    
T  13610819 gggtgggaataagccaggctgcttgtcaggggcctatggcccggcctactaaaagctcggcccgacctaactcgtttaataaataggtcaaacatgagct 13610918  T
Q  186 ttttaaaaagcctattaagttaaatg 211  Q
    ||||||||||| |||||| |||||||    
T  13610919 ttttaaaaagcttattaatttaaatg 13610944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 31763232 - 31763356
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| |||||| |||||||||||| |||||||||||   || || ||||||||||||| ||  |||||||| |||||||||||||| ||| |||||||    
T  31763232 gggtgggaataggtcaagccgctcgtcaggggcctatgattcggcctactaaaagcccgacccgacctaactcatttaataaataggttaaatatgagct 31763331  T
Q  186 ttttaaaaagcctattaagttaaat 210  Q
    |||||||||||||||||| ||||||    
T  31763332 ttttaaaaagcctattaatttaaat 31763356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 34458788 - 34458660
Alignment:
Q  80 gggtaagggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaaca 179  Q
    ||||| |||||| |||||| || ||||||||| ||||||||||||| || || | ||||||  ||   | |||||||||||||||||||| ||||||||     
T  34458788 gggtaggggtgggaataggtcaggccgctcgtcaggggcctatggctcggcctagtaaaagttcgggtcggcctaactcgtttaataaatgggtcaaact 34458689  T
Q  180 tgagctttttaaaaagcctattaagttaa 208  Q
    ||||||||||||| |||||||||| ||||    
T  34458688 tgagctttttaaagagcctattaatttaa 34458660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 53994608 - 53994730
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| ||||||||  |||| | || ||||||||||||| || || |||||||||||| |   ||||||||||||||||||||  ||||||  ||||||    
T  53994608 gggtgggaataggcctggccgtttgtcaggggcctatggctcggcctactaaaagcccggtttggcctaactcgtttaataaatgagtcaaagttgagct 53994707  T
Q  186 ttttaaaaagcctattaagttaa 208  Q
    |||||||||||||||||| ||||    
T  53994708 ttttaaaaagcctattaatttaa 53994730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 50689998 - 50689878
Alignment:
Q  103 gccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctatta 202  Q
    ||||||||| |||||||||||||||| || ||| ||||| |   ||  ||||||||||||||||||||||  ||  |||||||||||||||||| |||||    
T  50689998 gccgctcgtcaggggcctatggcccggcctactgaaagctcatccctacctaactcgtttaataaataggctaagtatgagctttttaaaaagcatatta 50689899  T
Q  203 agttaaatgagctaggcttag 223  Q
    | | ||||| | |||||||||    
T  50689898 attaaaatgggttaggcttag 50689878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 19901527 - 19901585
Alignment:
Q  152 ctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaaat 210  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||    
T  19901527 ctaactcgtttaataaataggtcaagcttgagctttttaaaaagcatattaatttaaat 19901585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 15521817 - 15521760
Alignment:
Q  151 cctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaa 208  Q
    ||||||| ||||||||||| ||| |||| |||||||||||||||||||||||| ||||    
T  15521817 cctaacttgtttaataaatgggttaaacttgagctttttaaaaagcctattaatttaa 15521760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 23602535 - 23602422
Alignment:
Q  95 taggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaa 194  Q
    ||||||| || | |||||||||||||||||| || || | ||||||| || | | ||||||||||||||||||||  || |||  ||| |||||||||||    
T  23602535 taggccaggctgttcgttaggggcctatggctcggcctattaaaagctcggttcggcctaactcgtttaataaatgagttaaatttgaactttttaaaaa 23602436  T
Q  195 gcctattaagttaa 208  Q
    | ||||||| ||||    
T  23602435 gtctattaatttaa 23602422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 47681628 - 47681741
Alignment:
Q  95 taggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaa 194  Q
    ||||||||||||||||| | |||||||||   || || |||||||| |||   | ||||| |||||||||||||| |||||| | |||| ||||||||||    
T  47681628 taggccaagccgctcgtcaagggcctatgattcggcctactaaaagtccggctcggcctagctcgtttaataaatgggtcaagcttgagatttttaaaaa 47681727  T
Q  195 gcctattaagttaa 208  Q
    | ||||||| ||||    
T  47681728 gtctattaatttaa 47681741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 38069221 - 38069171
Alignment:
Q  152 ctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaa 203  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  38069221 ctaactcgtttaataaataggttaaatatgagcttttt-aaaagcctattaa 38069171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 47304565 - 47304652
Alignment:
Q  113 aggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctat 200  Q
    ||||||||||||| ||  | |||||||||||||  | ||||||||||||||||||||  ||||| | ||| ||||||||||| |||||    
T  47304565 aggggcctatggctcgggctactaaaagcccgactcggcctaactcgtttaataaatgagtcaagcttgaactttttaaaaatcctat 47304652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 43137082 - 43137204
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| ||||||||| | |||| || ||||||||||||| || || | | ||| ||||   | ||||| ||||||||||||||  ||||| | ||||||    
T  43137082 gggtgggaataggccaggtcgcttgtcaggggcctatggctcggcctattgaaaacccggctcggcctagctcgtttaataaatgtgtcaagcttgagct 43137181  T
Q  186 ttttaaaaagcctattaagttaa 208  Q
    ||||||||| |||||||| ||||    
T  43137182 ttttaaaaaccctattaatttaa 43137204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 7291452 - 7291377
Alignment:
Q  133 actaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaa 208  Q
    |||||||| ||| | | |||||||||||||| |||||  |||||   |||||||||||||||||||||||| ||||    
T  7291452 actaaaagaccggttcggcctaactcgtttagtaaatgagtcaagtttgagctttttaaaaagcctattaatttaa 7291377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 5306189 - 5306060
Alignment:
Q  93 aataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaa 192  Q
    ||||||||| ||||||||| ||||||||||||||||||| ||| ||||| ||| ||  |||| ||||||||||||| ||||||| |||||||||||||||    
T  5306189 aataggccaggccgctcgtcaggggcctatggcccgacctactgaaagctcgacccgacctagctcgtttaataaaaaggtcaagcatgagctttttaaa 5306090  T
Q  193 aagcctattaagttaaatgagctaggctta 222  Q
    || | | |||| ||||||| | ||||||||    
T  5306089 aaacttgttaatttaaatgggttaggctta 5306060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 34640627 - 34640503
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| |||||||||  |||| ||| ||||||||||||| || || ||||||||||||   |  |||| |||| |||||||||| ||||||| ||||||    
T  34640627 gggtgggaataggccagaccgcccgtcaggggcctatggctcggcctactaaaagcccggctcgacctagctcgattaataaataagtcaaacttgagct 34640528  T
Q  186 ttttaaaaagcctattaagttaaat 210  Q
    |||||||||||||||||| ||||||    
T  34640527 ttttaaaaagcctattaatttaaat 34640503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 40355565 - 40355623
Alignment:
Q  150 gcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaa 208  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||    
T  40355565 gcctaactcgtttaataaatgggtcaaacttgagctttttaaaaagcctactaatttaa 40355623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 30491233 - 30491111
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| |||| |||| ||||  ||| |||| |||||||| || || |||||||| ||| | | |||||||| |||||||||||  ||||| | ||||||    
T  30491233 gggtgggaatatgccaggccgtccgtcagggacctatggctcggcctactaaaagtccggttcggcctaacttgtttaataaatgagtcaagcttgagct 30491134  T
Q  186 ttttaaaaagcctattaagttaa 208  Q
    |||||||||| ||||||| ||||    
T  30491133 ttttaaaaagtctattaacttaa 30491111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 38855093 - 38855230
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| |||||||||  |||| ||| |  |||||||||| || || |||||||||| |   |  |||||||||||||| ||||  ||||| | ||||||    
T  38855093 gggtgggaataggccagaccgcccgtcaacggcctatggctcggcctactaaaagccaggctcgacctaactcgtttaaaaaatgagtcaagcttgagct 38855192  T
Q  186 ttttaaaaagcctattaagttaaatgagctaggcttag 223  Q
    |||||||||||||||||| |||| |  |||||||||||    
T  38855193 ttttaaaaagcctattaatttaattaggctaggcttag 38855230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 41533442 - 41533495
Alignment:
Q  157 tcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaaat 210  Q
    |||||||||||||||| ||| | ||||||||||||||||| |||||| ||||||    
T  41533442 tcgtttaataaataggccaagcttgagctttttaaaaagcttattaatttaaat 41533495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 42471856 - 42471929
Alignment:
Q  150 gcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaaatgagctaggcttag 223  Q
    |||||||| |||||||||| |||| | ||||||||||||||||||| || |||| ||||||  | |||||||||    
T  42471856 gcctaacttgtttaataaacaggttagacatgagctttttaaaaagtctgttaatttaaataggttaggcttag 42471929  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 12069190 - 12069142
Alignment:
Q  83 taagggtggaaataggccaagccgctcgttaggggcctatggcccgacc 131  Q
    ||||||||| ||||||||| |||| |||| |||||||||||||||||||    
T  12069190 taagggtgggaataggccatgccgttcgtcaggggcctatggcccgacc 12069142  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 38120032 - 38119984
Alignment:
Q  160 tttaataaataggtcaaacatgagctttttaaaaagcctattaagttaa 208  Q
    |||||||||| |||||| | |||||||||||||||||||||||| ||||    
T  38120032 tttaataaatgggtcaagcttgagctttttaaaaagcctattaatttaa 38119984  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 38064469 - 38064544
Alignment:
Q  133 actaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaa 208  Q
    ||||||| |||||| |||||||  |||||||||||||| || || | ||| |||||||||||| ||||||| ||||    
T  38064469 actaaaaacccgattcagcctagttcgtttaataaataagttaagcttgaactttttaaaaagtctattaatttaa 38064544  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 54739133 - 54739258
Alignment:
Q  93 aataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaa 192  Q
    ||||||| | ||||||||| ||||| |||||||||| || ||| ||||   | ||  |||||||||||||||||||||||||||||||||| ||||||||    
T  54739133 aataggcgaggccgctcgtcaggggtctatggcccggcctactgaaagtttggtctggcctaactcgtttaataaataggtcaaacatgagttttttaaa 54739232  T
Q  193 aagcctattaagttaaatgagctagg 218  Q
    ||| ||||| | ||||||| ||||||    
T  54739233 aagtctatttatttaaatgggctagg 54739258  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 53199949 - 53200064
Alignment:
Q  88 gtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagcttt 187  Q
    |||| ||| ||||| ||||| ||| | ||||||||||| || |  |||||||| ||||  | ||||| ||||||||||||||  ||||| | ||||||||    
T  53199949 gtgggaatcggccaggccgcccgtcaagggcctatggctcggcttactaaaagtccgactctgcctatctcgtttaataaatgagtcaagcttgagcttt 53200048  T
Q  188 ttaaaaagcctattaa 203  Q
    ||||||||||||||||    
T  53200049 ttaaaaagcctattaa 53200064  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 50385106 - 50385230
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| ||||||||| ||||||||| ||||||||||| ||||||| ||| ||||| ||   |  ||||||||||||| ||||||||| | ||   || |    
T  50385106 gggtgggaataggccaggccgctcgtcaggggcctatgacccgacctacttaaagctcggctcgacctaactcgtttattaaataggttagactcaagtt 50385205  T
Q  186 ttttaaaaagcctattaagttaaat 210  Q
    |||||||||||  ||||| ||||||    
T  50385206 ttttaaaaagctcattaatttaaat 50385230  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 44028314 - 44028268
Alignment:
Q  155 actcgtttaataaataggtcaaacatgagctttttaaaaagcctatt 201  Q
    ||||||||||||||| ||||||   ||||||||||||||||||||||    
T  44028314 actcgtttaataaatgggtcaagtttgagctttttaaaaagcctatt 44028268  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 34582982 - 34583104
Alignment:
Q  86 gggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagct 185  Q
    |||||| ||||||||| ||||| ||| ||| ||||||||| || || ||||||||| ||   | |||||||||||||||| |||  ||||| | ||||||    
T  34582982 gggtgggaataggccaggccgcccgtcaggagcctatggctcggcctactaaaagctcggctcggcctaactcgtttaatcaatgagtcaagcttgagct 34583081  T
Q  186 ttttaaaaagcctattaagttaa 208  Q
    |||||||||||||||||| ||||    
T  34583082 ttttaaaaagcctattaatttaa 34583104  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 5927288 - 5927191
Alignment:
Q  113 aggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaaat 210  Q
    ||||||||||| | ||  | ||||||| ||||| ||| |||||| ||||||||||||||||||||| | ||||||||||||| |||||| | ||||||    
T  5927288 aggggcctatgactcggtctactaaaaacccgacccaacctaacccgtttaataaataggtcaaactttagctttttaaaaaacctattcatttaaat 5927191  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 16719706 - 16719766
Alignment:
Q  148 cagcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaa 208  Q
    ||||||||||||||||||||||  ||||| | |||||||||||||||||||||||| ||||    
T  16719706 cagcctaactcgtttaataaatgagtcaagcttgagctttttaaaaagcctattaatttaa 16719766  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 40897011 - 40897099
Alignment:
Q  106 gctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctttttaaaaa 194  Q
    |||||| ||||||||||||| ||||| ||||||||| || | | |||||  ||||||||||||| |||||||| | |||||||||||||    
T  40897011 gctcgtcaggggcctatggctcgacctactaaaagctcggttcggcctagttcgtttaataaatgggtcaaacttaagctttttaaaaa 40897099  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 10542390 - 10542335
Alignment:
Q  153 taactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaagttaa 208  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||||||| ||||    
T  10542390 taactcgtttaataaatgggtcaagcttgagctttttaaaaagcctattaatttaa 10542335  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 203
Target Start/End: Complemental strand, 12621979 - 12621863
Alignment:
Q  87 ggtggaaataggccaagccgctcgttaggggcctatggcccgacccactaaaagcccgatccagcctaactcgtttaataaataggtcaaacatgagctt 186  Q
    |||||||||||||||  |||| |||  ||| |||||||| || || |||||||| | | |   ||||| ||||||||||||||  |||||   |||||||    
T  12621979 ggtggaaataggccagaccgcccgtccgggacctatggctcggcctactaaaagtctggtttggcctagctcgtttaataaatgagtcaagtttgagctt 12621880  T
Q  187 tttaaaaagcctattaa 203  Q
    |||||||||||||||||    
T  12621879 tttaaaaagcctattaa 12621863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 31224295 - 31224242
Alignment:
Q  150 gcctaactcgtttaataaataggtcaaacatgagctttttaaaaagcctattaa 203  Q
    |||||||||||||||||||| ||| |||| ||| ||||| |||||| |||||||    
T  31224295 gcctaactcgtttaataaatgggttaaacttgaacttttaaaaaagtctattaa 31224242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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