View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9480_low_16 (Length: 239)

Name: NF9480_low_16
Description: NF9480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9480_low_16
NF9480_low_16
[»] chr1 (17 HSPs)
chr1 (7-223)||(13271876-13272092)
chr1 (10-223)||(13244213-13244423)
chr1 (10-223)||(13086397-13086610)
chr1 (89-207)||(12963679-12963797)
chr1 (65-223)||(19278912-19279070)
chr1 (58-221)||(13069916-13070079)
chr1 (63-221)||(13007489-13007647)
chr1 (63-203)||(30367853-30367993)
chr1 (63-206)||(13064958-13065101)
chr1 (58-221)||(13101289-13101452)
chr1 (10-220)||(19727443-19727647)
chr1 (98-221)||(13204748-13204871)
chr1 (10-197)||(13214132-13214313)
chr1 (65-224)||(13080609-13080768)
chr1 (102-217)||(13161814-13161929)
chr1 (102-216)||(13130122-13130236)
chr1 (102-217)||(13094692-13094807)
[»] chr6 (1 HSPs)
chr6 (98-222)||(31396455-31396580)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 13272092 - 13271876
Alignment:
Q  7 tgttaaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaa 106  Q
    |||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13272092 tgttaaaaccactaatgaaggaaggcttgggaaaggaagaaacgaatgaaaatgaaaagtatattagagacactgcattcactctcttggctgcaggaaa 13271993  T
Q  107 tggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcaaaacttattcaagagatcaaagataattgtcta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  13271992 tggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctaatgtggaagcaaaacttattcaagagatcaaagatcattgtcta 13271893  T
Q  207 acacaagaggagaattt 223  Q
    |||||||||||||||||    
T  13271892 acacaagaggagaattt 13271876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 13244213 - 13244423
Alignment:
Q  10 taaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaatgg 109  Q
    |||||| ||||||||| ||| ||||||||||||  |||||||  |   |||| |||||||| |||||||||||  | | |||||| |  |||||||||||    
T  13244213 taaaagaactaatgaaggaaagattgggaaagggggaaatgatcg---atgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaatgg 13244309  T
Q  110 aacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcaaaacttattcaagagatcaaagataattgtctaaca 209  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  13244310 aacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatcaaagataattgtctaaca 13244409  T
Q  210 caagaggagaattt 223  Q
    ||||||||||||||    
T  13244410 caagaggagaattt 13244423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 13086610 - 13086397
Alignment:
Q  10 taaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaatgg 109  Q
    |||| ||||| ||||| ||||| |||||||| || ||||||  ||||| ||| ||||||||||||||||||||||||| |||||| || ||||||| |||    
T  13086610 taaaggcactgatgaaggaaggcttgggaaatgaggaaatggttgaaattgataagtatattagagacactgcattcaatctcttagctgcaggaagtgg 13086511  T
Q  110 aacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcaaaacttattcaagagatcaaagataattgtctaaca 209  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||   || |||||||| ||| | ||||||||||| ||||||||||||||| ||    
T  13086510 aacagttagttcaggtctaagttggttctcttggcttgtttcaactcatttcatagtggaagctaaaataattcaagagataaaagataattgtctatca 13086411  T
Q  210 caagaggagaattt 223  Q
    || ||||| |||||    
T  13086410 catgaggataattt 13086397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 12963679 - 12963797
Alignment:
Q  89 tctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcaaaacttattcaagag 188  Q
    |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||    
T  12963679 tctcttagctgcaggaagtggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaagag 12963778  T
Q  189 atcaaagataattgtctaa 207  Q
    || |||||||||| |||||    
T  12963779 attaaagataattttctaa 12963797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 19278912 - 19279070
Alignment:
Q  65 gtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctatt 164  Q
    ||||||||||||||||||  ||| ||||||||| ||||| ||||||||| ||||||| ||||| | ||||||||||||||| || |||||||||||||||    
T  19278912 gtatattagagacactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctatt 19279011  T
Q  165 gtggaagcaaaacttattcaagagatcaaagataattgtctaacacaagaggagaattt 223  Q
    || ||||||||| |||||||||||||||| | ||| ||| ||||| ||||||| |||||    
T  19279012 gtcgaagcaaaaattattcaagagatcaaggttaactgtttaacaaaagaggataattt 19279070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 221
Target Start/End: Original strand, 13069916 - 13070079
Alignment:
Q  58 atgaaaagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactca 157  Q
    |||| |||||| ||||||||| |||| || |||||||   |||||||||||| ||||||| ||||||||| |||||||| || |||||||||||||||||    
T  13069916 atgagaagtatcttagagacaatgcactctctctctttttagcaggaaatggcacagttacttcaggtctcagttggtttttctggcttgtttcaactca 13070015  T
Q  158 tcctattgtggaagcaaaacttattcaagagatcaaagataattgtctaacacaagaggagaat 221  Q
    ||||||||||||||| ||| |||||||||| || |||||||| || |  |||||||||||||||    
T  13070016 tcctattgtggaagccaaaattattcaagaaataaaagataactggcccacacaagaggagaat 13070079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 13007647 - 13007489
Alignment:
Q  63 aagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatccta 162  Q
    |||||| ||||||||| ||   ||||||||||   |||||||||||| ||| ||||||||||||| |||||||| || ||||||||||||||||||||||    
T  13007647 aagtatcttagagacaatgtcctcactctctttttagcaggaaatggcacaattagttcaggtctcagttggtttttctggcttgtttcaactcatccta 13007548  T
Q  163 ttgtggaagcaaaacttattcaagagatcaaagataattgtctaacacaagaggagaat 221  Q
    |||||||||| ||| |||||||||| ||||||||||| || |  |||||||||||||||    
T  13007547 ttgtggaagccaaaattattcaagaaatcaaagataactggcccacacaagaggagaat 13007489  T

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Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 63 - 203
Target Start/End: Original strand, 30367853 - 30367993
Alignment:
Q  63 aagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatccta 162  Q
    |||||| ||||||||| |||| || |||| |||  |||||| ||||| ||| |||||||| |||| |||||||| || ||||||||||||||||||||||    
T  30367853 aagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacacttagttcaagtctcagttggtttttctggcttgtttcaactcatccta 30367952  T
Q  163 ttgtggaagcaaaacttattcaagagatcaaagataattgt 203  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  30367953 ttgtggaagccaaaattattcaagagatcaaagataattgt 30367993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 13064958 - 13065101
Alignment:
Q  63 aagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatccta 162  Q
    |||||| |||||||||||||| ||| ||| |||  ||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||  |||||||     
T  13064958 aagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggttcttttggcttgtttcatgtcatcctg 13065057  T
Q  163 ttgtggaagcaaaacttattcaagagatcaaagataattgtcta 206  Q
    |||||||||| ||  ||||||||||||| |||||||||||||||    
T  13065058 ttgtggaagccaagattattcaagagatgaaagataattgtcta 13065101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 13101452 - 13101289
Alignment:
Q  58 atgaaaagtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactca 157  Q
    |||| |||||| ||||||||| || | ||||||||||   ||||||||||||  |||||||||||| ||| |||||||| || ||||||||||| |||||    
T  13101452 atgagaagtatcttagagacaatgtaatcactctctttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactca 13101353  T
Q  158 tcctattgtggaagcaaaacttattcaagagatcaaagataattgtctaacacaagaggagaat 221  Q
    ||||||||||||||| ||| | |||||||| ||||||||||| ||||  |||||||||||||||    
T  13101352 tcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaat 13101289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 19727647 - 19727443
Alignment:
Q  10 taaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaatgg 109  Q
    |||||||||||||||| |||||||  |||||||  ||||||||||| ||      |||| ||||||||| |  | ||||||||||   ||||||||||||    
T  19727647 taaaagcactaatgaaggaaggatctggaaagggggaaatgaatgagaa------gtatcttagagacaatttactcactctctttttagcaggaaatgg 19727554  T
Q  110 aacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcaaaacttattcaagagatcaaagataattgtctaaca 209  Q
      |||||||| ||||||| |||||||| |||||||||||||| |||||||||||||| ||||| ||| |||||||||| ||||||||||| || |  |||    
T  19727553 cccagttagtacaggtctcagttggtttttttggcttgtttcgactcatcctattgtcgaagccaaaattattcaagaaatcaaagataactggcccaca 19727454  T
Q  210 caagaggagaa 220  Q
    |||||||||||    
T  19727453 caagaggagaa 19727443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 13204871 - 13204748
Alignment:
Q  98 agcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcaaaacttattcaagagatcaaagat 197  Q
    |||||||| |||  ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| | |||||||| |||||||||    
T  13204871 agcaggaagtggtccagctagttcaggtctaagttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagat 13204772  T
Q  198 aattgtctaacacaagaggagaat 221  Q
    || ||||  |||||||||||||||    
T  13204771 aactgtcctacacaagaggagaat 13204748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 13214313 - 13214132
Alignment:
Q  10 taaaagcactaatgaaagaaggattgggaaaggaagaaatgaatgaaaatgaaaagtatattagagacactgcattcactctcttggcagcaggaaatgg 109  Q
    |||||||||||||||| |||||||| |||||||  |||||| |||| ||      |||| ||||||||| |||  ||||||||||   ||||||||||||    
T  13214313 taaaagcactaatgaaggaaggatttggaaagggggaaatggatgagaa------gtatcttagagacaatgcgatcactctctttttagcaggaaatgg 13214220  T
Q  110 aacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcaaaacttattcaagagatcaaagat 197  Q
      ||||| |||||||||| | |||||| || ||||||||||||||||||| |||||||||||| ||| |||||||||| || ||||||    
T  13214219 cccagttcgttcaggtctcatttggtttttctggcttgtttcaactcatcttattgtggaagctaaaattattcaagaaataaaagat 13214132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 65 - 224
Target Start/End: Original strand, 13080609 - 13080768
Alignment:
Q  65 gtatattagagacactgcattcactctcttggcagcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctatt 164  Q
    |||||||||||| ||| || ||| ||||||||  ||||||||||||||| ||||| ||||||| | |||||| |||||||| |||||||| |||||||      
T  13080609 gtatattagagatactacaatcaatctcttggttgcaggaaatggaacaattagtacaggtctcacttggtttttttggctggtttcaacgcatcctagg 13080708  T
Q  165 gtggaagcaaaacttattcaagagatcaaagataattgtctaacacaagaggagaatttt 224  Q
    || || |  ||| |||||||||||||||||||||||||| ||| ||| || |||||||||    
T  13080709 gtagatggtaaaattattcaagagatcaaagataattgtttaaaacacgatgagaatttt 13080768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 13161929 - 13161814
Alignment:
Q  102 ggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcaaaacttattcaagagatcaaagataatt 201  Q
    ||||||||  || ||||||||| ||| |||||||| || |||||  |||||||| ||||||||||||||| |||| | ||||||||||||||||||||||    
T  13161929 ggaaatggttcaattagttcagctctcagttggtttttctggctcctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 13161830  T
Q  202 gtctaacacaagagga 217  Q
    | ||||||||||||||    
T  13161829 ggctaacacaagagga 13161814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 13130236 - 13130122
Alignment:
Q  102 ggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcaaaacttattcaagagatcaaagataatt 201  Q
    ||||||||  || ||||||||| ||| |||||||| || |||||| |||||||| ||||||||||||||| |||| | ||||||||||||||||||||||    
T  13130236 ggaaatggttcaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 13130137  T
Q  202 gtctaacacaagagg 216  Q
    |  ||||||||||||    
T  13130136 ggttaacacaagagg 13130122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 13094807 - 13094692
Alignment:
Q  102 ggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcaaaacttattcaagagatcaaagataatt 201  Q
    |||||||| ||| ||||||||| ||| |||||||| || |||||| |||||||| ||||||||||||||| |||| | ||||||||||||| ||||||||    
T  13094807 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcagagataatt 13094708  T
Q  202 gtctaacacaagagga 217  Q
    |  |||||| ||||||    
T  13094707 ggttaacacgagagga 13094692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 31396455 - 31396580
Alignment:
Q  98 agcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgttt-caactcatcctattgtggaagcaaaacttattcaagagatcaaaga 196  Q
    |||||||||||| ||| |||||||| ||||  ||||||| || |||||||||| |||||||||||| ||||||||| ||| |||||||||||||  ||||    
T  31396455 agcaggaaatggcacaattagttcaagtctcggttggtttttctggcttgttttcaactcatcctaatgtggaagccaaaattattcaagagattcaaga 31396554  T
Q  197 taattgtctaacacaagaggagaatt 222  Q
    ||| |||| ||| ||| | |||||||    
T  31396555 taactgtcaaacccaacatgagaatt 31396580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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