View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9480_low_18 (Length: 238)
Name: NF9480_low_18
Description: NF9480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9480_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 17488796 - 17488639
Alignment:
| Q |
65 |
taataatagggatgaaaagtgaaatttatttctctatataaatgtgtagatggacgaaatttcgatcatagaaaatgctagagactatgtagcaacactt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17488796 |
taataatagggatgaaaagtgaaatttatttctctatataaatgtgtagatggacgaaatttcgatcatagaaaatgctagagactatgtagcaacactt |
17488697 |
T |
|
| Q |
165 |
caagaacgtgtgagagagctggaacaagaagatggatccaacatttgtacaaacaaaa |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17488696 |
caagaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaa |
17488639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 17564418 - 17564575
Alignment:
| Q |
65 |
taataatagggatgaaaagtgaaatttatttctctatataaatgtgtagatggacgaaatttcgatcatagaaaatgctagagactatgtagcaacactt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17564418 |
taataatagggatgaaaagtgaaatttatttctctatataaatgtgtagatggacgaaatttcgatcatagaaaatgctagagactatgtagcaacactt |
17564517 |
T |
|
| Q |
165 |
caagaacgtgtgagagagctggaacaagaagatggatccaacatttgtacaaacaaaa |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17564518 |
caagaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaa |
17564575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 1917054 - 1916933
Alignment:
| Q |
101 |
tataaatgtgtagatggacgaaatttcgatcatagaaaatgctagagactatgtagcaacacttcaagaacgtgtgagagagctggaacaagaagatgga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
1917054 |
tataaatgtgtagatggacgaactttcgatcatagaacaagctagagactatttagcaacacttcaagaacgtgtgagagagctagaagaagaagctgga |
1916955 |
T |
|
| Q |
201 |
tccaacatttgtacaaacaaaa |
222 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
1916954 |
tccaacatttgtactaacaaaa |
1916933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 1869873 - 1869792
Alignment:
| Q |
141 |
gctagagactatgtagcaacacttcaagaacgtgtgagagagctggaacaagaagatggatccaacatttgtacaaacaaaa |
222 |
Q |
| |
|
|||||||||||||| | || |||| |||||||||||||||||| |||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
1869873 |
gctagagactatgtggaaaaacttgcagaacgtgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaa |
1869792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University