View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9480_low_24 (Length: 221)
Name: NF9480_low_24
Description: NF9480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9480_low_24 |
 | |
|
| [»] chr6 (29 HSPs) |
| |
|
| [»] scaffold0349 (2 HSPs) |
| | |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26802903 - 26802683
Alignment:
| Q |
1 |
aaaaacgtatataagaaaggtatttcccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26802903 |
aaaaacgtatataagaaaggtatttcccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggat |
26802804 |
T |
|
| Q |
101 |
ttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
26802803 |
ttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctccaacctctccatgttat |
26802704 |
T |
|
| Q |
201 |
ccttatcattttgaaaccttt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26802703 |
ccttatcattttgaaaccttt |
26802683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 27677346 - 27677558
Alignment:
| Q |
7 |
gtatataagaaaggtatttcccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagt |
106 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27677346 |
gtatataaaaaaggtatttcccttttaacctttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagt |
27677445 |
T |
|
| Q |
107 |
aaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttat |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||| | | || |
|
|
| T |
27677446 |
aaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgcttttcggat |
27677545 |
T |
|
| Q |
207 |
cattttgaaacct |
219 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27677546 |
cattttgaaacct |
27677558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 27592752 - 27592964
Alignment:
| Q |
7 |
gtatataagaaaggtatttcccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagt |
106 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27592752 |
gtatataaaaaaggtatttcccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagt |
27592851 |
T |
|
| Q |
107 |
aaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttat |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||||||| | | | || |
|
|
| T |
27592852 |
aaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggat |
27592951 |
T |
|
| Q |
207 |
cattttgaaacct |
219 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27592952 |
cattttgaaacct |
27592964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 27679401 - 27679189
Alignment:
| Q |
7 |
gtatataagaaaggtatttcccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagt |
106 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27679401 |
gtatataaaaaaggtatttcccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagt |
27679302 |
T |
|
| Q |
107 |
aaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttat |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||| | | | || |
|
|
| T |
27679301 |
aaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctttttccatccttgcaacctctccatgtttttcggat |
27679202 |
T |
|
| Q |
207 |
cattttgaaacct |
219 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27679201 |
cattttgaaacct |
27679189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 27706135 - 27706346
Alignment:
| Q |
7 |
gtatataagaaaggtatttcccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagt |
106 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27706135 |
gtatataaaaaaggtatttccc-tttaaactttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagt |
27706233 |
T |
|
| Q |
107 |
aaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttat |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||| | | | || |
|
|
| T |
27706234 |
aaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggat |
27706333 |
T |
|
| Q |
207 |
cattttgaaacct |
219 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27706334 |
cattttgaaacct |
27706346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27604428 - 27604651
Alignment:
| Q |
1 |
aaaaacgtatataagaaaggtattt---cccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaatag |
97 |
Q |
| |
|
||||||||| |||| |||||||||| | ||||||||||| || |||||||||||||| ||||||| ||||| ||| |||||| ||||||||||||||| |
|
|
| T |
27604428 |
aaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggtaattgaaattgaataaagaaaatacaaaagggaaaaatag |
27604527 |
T |
|
| Q |
98 |
gatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgc |
197 |
Q |
| |
|
|||||| ||| |||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||| |||||||| ||| |
|
|
| T |
27604528 |
gatttatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgt |
27604627 |
T |
|
| Q |
198 |
tatccttatcattttgaaaccttt |
221 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
27604628 |
tatcctcatcattttgaaaccttt |
27604651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 27698297 - 27698438
Alignment:
| Q |
78 |
aatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttcca |
177 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
27698297 |
aatacaaaagggaaatataggatttaagtaaagttgggtacctgggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttcca |
27698396 |
T |
|
| Q |
178 |
tcgctccaacctctccatgctatccttatcattttgaaacct |
219 |
Q |
| |
|
|| || ||||||||||||| | | | ||||||||||||||| |
|
|
| T |
27698397 |
tccctgcaacctctccatgtttttcggatcattttgaaacct |
27698438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 27718218 - 27718323
Alignment:
| Q |
114 |
ggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttg |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
27718218 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttg |
27718317 |
T |
|
| Q |
214 |
aaacct |
219 |
Q |
| |
|
|||||| |
|
|
| T |
27718318 |
aaacct |
27718323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 27610841 - 27610946
Alignment:
| Q |
114 |
ggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttg |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||||| || ||||||||||||| ||| |||||||||||| |
|
|
| T |
27610841 |
ggtacccaggaggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttg |
27610940 |
T |
|
| Q |
214 |
aaacct |
219 |
Q |
| |
|
|||||| |
|
|
| T |
27610941 |
aaacct |
27610946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 221
Target Start/End: Complemental strand, 26884580 - 26884406
Alignment:
| Q |
45 |
gagattattgggaaatt-gaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccgg |
143 |
Q |
| |
|
|||||||||||| |||| ||| || |||||| ||||||||||| | |||||| |||||||||||||| || |||| | || ||| ||||||||||| |
|
|
| T |
26884580 |
gagattattggggaatttgaaattaaagaaagaaaatataaaaaaggaaaatatgatttaagtaaagtgggatacccaaga---ctaaaatggtagccgg |
26884484 |
T |
|
| Q |
144 |
acaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttgaaaccttt |
221 |
Q |
| |
|
||||||||||| | || ||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26884483 |
acaagttagcaacttgcctcatagccattttccatcgctgcaacctctccatgttatccttatcattttgaaaccttt |
26884406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 28781477 - 28781382
Alignment:
| Q |
124 |
aggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttgaaacct |
219 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |||||| | | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28781477 |
aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacct |
28781382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 28786616 - 28786521
Alignment:
| Q |
124 |
aggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttgaaacct |
219 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |||||| | | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28786616 |
aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacct |
28786521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 28792737 - 28792642
Alignment:
| Q |
124 |
aggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttgaaacct |
219 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |||||| | | ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28792737 |
aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacct |
28792642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 69 - 221
Target Start/End: Complemental strand, 26862000 - 26861854
Alignment:
| Q |
69 |
aagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagc |
168 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||| || |||| ||||||| |||| ||| ||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
26862000 |
aagaaagaaaatataaaaaggaa---taggatttatgttaagtggggtacccagga---ctaaaatggtagcctgacaagttagcagcttggttcagagc |
26861907 |
T |
|
| Q |
169 |
caatttccatcgctccaacctctccatgctatccttatcattttgaaaccttt |
221 |
Q |
| |
|
| |||||||| || ||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
26861906 |
aactttccatctctgcaacctctccatgttatccatatcattttgaaaccttt |
26861854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 25580112 - 25580013
Alignment:
| Q |
69 |
aagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagc |
168 |
Q |
| |
|
||||||||||||||| || ||||||| | | |||||||||||| ||||||| | ||||||||| ||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
25580112 |
aagaaataaaatatagaaaggaaaaagaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagc |
25580013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 25538931 - 25538846
Alignment:
| Q |
71 |
gaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagc |
156 |
Q |
| |
|
||||||||||||| || ||||||| | |||||||||||||| ||||||| | ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
25538931 |
gaaataaaatatagaaaggaaaaacaagatttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc |
25538846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 26646914 - 26646763
Alignment:
| Q |
23 |
tttcccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgag |
122 |
Q |
| |
|
||||| |||||| ||||||||||||||| | ||||| || || || ||| ||||||||||| ||||||| | | |||||||||||| ||||||| || |
|
|
| T |
26646914 |
tttcctatttaagctttaagatgagattttgtggaaaaaaaa-ttaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtacccag |
26646816 |
T |
|
| Q |
123 |
gaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccat |
178 |
Q |
| |
|
|| |||| |||||| ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
26646815 |
ga---ctataatggtatccggacaagttagcagcttgggtcagagccaacttccat |
26646763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 26752882 - 26752731
Alignment:
| Q |
23 |
tttcccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgag |
122 |
Q |
| |
|
||||| |||||| ||||||||||||||| | ||||| || || || ||| ||||||||||| ||||||| | | |||||||||||| ||||||| || |
|
|
| T |
26752882 |
tttcctatttaagctttaagatgagattttgtggaaaaaaaa-ttaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtacccag |
26752784 |
T |
|
| Q |
123 |
gaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccat |
178 |
Q |
| |
|
|| |||| |||||| ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
26752783 |
ga---ctataatggtatccggacaagttagcagcttgggtcagagccaacttccat |
26752731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 217
Target Start/End: Original strand, 27530983 - 27531139
Alignment:
| Q |
58 |
aattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcc |
157 |
Q |
| |
|
||||||| || |||||| |||||||||||||||||||||||||||||||||||| || |||| | | ||| ||| | ||| ||||||||||| || |
|
|
| T |
27530983 |
aattgaaattaaagaaagaaaatataaaagggaaaaataggatttaagtaaagtgggctacc---catgtttataatgctggccagacaagttagccgct |
27531079 |
T |
|
| Q |
158 |
tgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttgaaac |
217 |
Q |
| |
|
||| ||||||| ||||||| ||| ||||||||| || |||||||||||||||||||| |
|
|
| T |
27531080 |
tggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaac |
27531139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 26143256 - 26143171
Alignment:
| Q |
71 |
gaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagc |
156 |
Q |
| |
|
||||||||||||| || ||||||| | | |||||||||||| ||||||| | ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
26143256 |
gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc |
26143171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 27427461 - 27427550
Alignment:
| Q |
130 |
atcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttgaaacct |
219 |
Q |
| |
|
||||||||||| || ||||||||||||| | ||||||||| ||||||| ||| ||||||||||||| | | | |||||||||||||||| |
|
|
| T |
27427461 |
atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacct |
27427550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 25482133 - 25482034
Alignment:
| Q |
71 |
gaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagcca |
170 |
Q |
| |
|
||||||||||||| || ||||||| | | |||||||||||| |||||| | ||||||||| ||| ||||||||||| |||||||| || || ||||||| |
|
|
| T |
25482133 |
gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtactcatgaggactataatgatagccggacaaattagcagcttgagtaagagcca |
25482034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 26056290 - 26056218
Alignment:
| Q |
98 |
gatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagcca |
170 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||| ||| |||||||||||||||||||| || || ||||||| |
|
|
| T |
26056290 |
gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagcttgagtaagagcca |
26056218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 26076260 - 26076188
Alignment:
| Q |
98 |
gatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagcca |
170 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||| ||| |||||||||||||||||||| || || ||||||| |
|
|
| T |
26076260 |
gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagcttgagtaagagcca |
26076188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 25511333 - 25511271
Alignment:
| Q |
69 |
aagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactat |
131 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||| ||||||| | ||||||||| |
|
|
| T |
25511333 |
aagaaataaaatataaaaaagaaaaacaagatttaagtaaagtagggtacccatgaggactat |
25511271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 27337823 - 27338003
Alignment:
| Q |
30 |
tttaacctttaagatgagattattgggaaattgaagttgaagaaat-aaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggac |
128 |
Q |
| |
|
||||| |||||||||||||||| |||| || ||| || |||||| ||||||||||| ||||||||| ||| ||||||||| ||||||| || | |
|
|
| T |
27337823 |
tttaagctttaagatgagattaatggggaaaagaaattaaagaaaagaaaatataaaaaggaaaaataatatt-aagtaaagtggggtacccttga---c |
27337918 |
T |
|
| Q |
129 |
tatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttg |
213 |
Q |
| |
|
|| ||||| |||||| ||||||||||| ||||| ||||||| |||||| || ||||||||||||| | ||||| | |||||| |
|
|
| T |
27337919 |
taaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttg |
27338003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 27398563 - 27398743
Alignment:
| Q |
30 |
tttaacctttaagatgagattattgggaaattgaagttgaagaaat-aaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggac |
128 |
Q |
| |
|
||||| |||||||||||||||| |||| || ||| || |||||| ||||||||||| ||||||||| ||| ||||||||| ||||||| || | |
|
|
| T |
27398563 |
tttaagctttaagatgagattaatggggaaaagaaattaaagaaaagaaaatataaaaaggaaaaataatatt-aagtaaagtggggtacccttga---c |
27398658 |
T |
|
| Q |
129 |
tatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttg |
213 |
Q |
| |
|
|| ||||| |||||| ||||||||||| ||||| ||||||| |||||| || ||||||||||||| | ||||| | |||||| |
|
|
| T |
27398659 |
taaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttg |
27398743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 26656318 - 26656238
Alignment:
| Q |
133 |
atggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttg |
213 |
Q |
| |
|
||||||||| |||||||| ||||| | ||||||||||| |||||| |||||||||||| |||| | ||||| | |||||| |
|
|
| T |
26656318 |
atggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttg |
26656238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 26762289 - 26762209
Alignment:
| Q |
133 |
atggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttg |
213 |
Q |
| |
|
||||||||| |||||||| ||||| | ||||||||||| |||||| |||||||||||| |||| | ||||| | |||||| |
|
|
| T |
26762289 |
atggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttg |
26762209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 3259 - 3341
Alignment:
| Q |
114 |
ggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatg |
196 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
3259 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatg |
3341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 14195 - 14300
Alignment:
| Q |
114 |
ggtaccgaggaggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttg |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||| | | | ||||||||| |
|
|
| T |
14195 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttg |
14294 |
T |
|
| Q |
214 |
aaacct |
219 |
Q |
| |
|
|||||| |
|
|
| T |
14295 |
aaacct |
14300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 4529 - 4615
Alignment:
| Q |
133 |
atggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttgaaacct |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||| | | ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
4529 |
atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacct |
4615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 13490 - 13576
Alignment:
| Q |
133 |
atggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttgaaacct |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||| | | ||| | ||||||| ||| |||||||||||||||||| |
|
|
| T |
13490 |
atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacct |
13576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 7854 - 7768
Alignment:
| Q |
133 |
atggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttgaaacct |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||| | | ||| | ||||||| ||| |||||||||||||||||| |
|
|
| T |
7854 |
atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacct |
7768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 59902 - 59813
Alignment:
| Q |
130 |
atcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttgaaacct |
219 |
Q |
| |
|
||||||||||| || ||||||||||||| | ||||||||| ||||||| ||| ||||||||||||| | | | |||||||||||||||| |
|
|
| T |
59902 |
atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacct |
59813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 18074094 - 18074005
Alignment:
| Q |
130 |
atcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatgctatccttatcattttgaaacct |
219 |
Q |
| |
|
||||||||||| || ||||||||||||| | ||||||||| ||||||| ||| ||||||||||||| | | | |||||||||||||||| |
|
|
| T |
18074094 |
atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacct |
18074005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 18655313 - 18655385
Alignment:
| Q |
124 |
aggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatg |
196 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | |||||||||||| |||||| | | ||||| ||||||| |
|
|
| T |
18655313 |
aggactagaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatg |
18655385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 18723921 - 18723993
Alignment:
| Q |
124 |
aggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatg |
196 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | |||||||||||| |||||| | | ||||| ||||||| |
|
|
| T |
18723921 |
aggactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatg |
18723993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 18731349 - 18731412
Alignment:
| Q |
133 |
atggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatg |
196 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| |||||| | | ||||| ||||||| |
|
|
| T |
18731349 |
atggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatg |
18731412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 18679403 - 18679475
Alignment:
| Q |
124 |
aggactatcatggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatg |
196 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | ||||||||| || |||||| | | ||||| ||||||| |
|
|
| T |
18679403 |
aggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatg |
18679475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 18699245 - 18699308
Alignment:
| Q |
133 |
atggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatg |
196 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| || |||||| | | ||||| ||||||| |
|
|
| T |
18699245 |
atggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatg |
18699308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 268202 - 268265
Alignment:
| Q |
133 |
atggtagccggacaagttagcagcctgggtcagagccaatttccatcgctccaacctctccatg |
196 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||||||||| |||||| | | ||||| ||||||| |
|
|
| T |
268202 |
atggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgctccatg |
268265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 28127516 - 28127559
Alignment:
| Q |
125 |
ggactatcatggtagccggacaagttagcagcctgggtcagagc |
168 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
28127516 |
ggactataatggtagccggacaagttagcagcttgggttagagc |
28127559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 28164200 - 28164243
Alignment:
| Q |
125 |
ggactatcatggtagccggacaagttagcagcctgggtcagagc |
168 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
28164200 |
ggactataatggtagccggacaagttagcagcttgggttagagc |
28164243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 29273628 - 29273673
Alignment:
| Q |
133 |
atggtagccggacaagttagcagcctgggtcagagccaatttccat |
178 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
29273628 |
atggtagccagacaagttagaagcttgggtcagagccaacttccat |
29273673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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