View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9480_low_4 (Length: 368)
Name: NF9480_low_4
Description: NF9480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9480_low_4 |
 | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 13380521 - 13380178
Alignment:
| Q |
17 |
agatagtttctcaaactacctataattagtgtgaagaatcgtacatgcattgtggcaacaaatttggaggatagacttagaggaggaaaagactaatcat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13380521 |
agatagtttctcaaactacctataattagtgtgaagaatcgtacatgcattgtggcaacaaatttggaggataaacttagaggaggaaaagactaatcat |
13380422 |
T |
|
| Q |
117 |
gtaacacgggtttagagttttgcttggaaggaaagcg-ct----taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacg |
211 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13380421 |
gta-cacaggtttagagttttgcttggaaggaaagcgtctaaggtaaggtaagggttctagtcttgaccatgatttaagtgaaaatgataggttatgacg |
13380323 |
T |
|
| Q |
212 |
ttggatttgatatgcttcttgattcatggatgagtgaaaagattaattatgttttattaattttcttgtagttgataattatatgaattggtgagttgca |
311 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13380322 |
ttgaatttgatatacttcttgattcatggatgagtgaaaagatttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgca |
13380223 |
T |
|
| Q |
312 |
attttgttaaagtatgtaattagatgaatgtgtaaatcttgatgt |
356 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
13380222 |
attttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgt |
13380178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 178 - 356
Target Start/End: Complemental strand, 51443661 - 51443482
Alignment:
| Q |
178 |
accatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagattaattatgttttattaattttc |
276 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51443661 |
accatgatttgaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagatttattatgttttattaattttc |
51443562 |
T |
|
| Q |
277 |
ttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
51443561 |
ttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgttgaatgtgtaaatcttgatgt |
51443482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 168 - 340
Target Start/End: Complemental strand, 31654719 - 31654547
Alignment:
| Q |
168 |
tctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagattaattatgtttt |
266 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| ||| |||||| |
|
|
| T |
31654719 |
tctagtcttgaccatg-tttaaatgaaaatgatagattatgatgttggatttgatatgcttcttgatttaatggatgagtgaaaagatttattgtgtttt |
31654621 |
T |
|
| Q |
267 |
attaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
340 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| |
|
|
| T |
31654620 |
attatttttcttgtagttgctaattataagaattggtgagttgcaattttgttagagcatgtgatttgatgaat |
31654547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 252 - 356
Target Start/End: Complemental strand, 8311247 - 8311143
Alignment:
| Q |
252 |
gattaattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatctt |
351 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
8311247 |
gatttattatgtttgattaattttcttgtagttaataattataagaattggtgggttgcaatcttgttaaagtatgtgatttgatgaatgtgtaaatctt |
8311148 |
T |
|
| Q |
352 |
gatgt |
356 |
Q |
| |
|
||||| |
|
|
| T |
8311147 |
gatgt |
8311143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 24302924 - 24302879
Alignment:
| Q |
310 |
caattttgttaaagtatgtaattagatgaatgtgtaaatcttgatg |
355 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
24302924 |
caattttgtaaaagtatgtgatttcatgaatgtgtaaatcttgatg |
24302879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 24304487 - 24304423
Alignment:
| Q |
172 |
gtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattc |
236 |
Q |
| |
|
||||| |||| |||||| ||||||| |||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
24304487 |
gtcttaaccacgatttagatgaaaataataggttatgatattggatttgatatgcttcatgattc |
24304423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 142 - 356
Target Start/End: Complemental strand, 40888861 - 40888647
Alignment:
| Q |
142 |
ggaaggaaagcgcttaaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattcatgga |
241 |
Q |
| |
|
||||| ||||| | |||||||| || ||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
40888861 |
ggaagtaaagctcctaaggtaagggccctagtcttggccatgatttaattgaaaatgatagattatgacgttgaatttaatatgcttcttgattcatgga |
40888762 |
T |
|
| Q |
242 |
tgagtgaaaagattaattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatg |
341 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
40888761 |
tgagtgaaaagatttattatattttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatg |
40888662 |
T |
|
| Q |
342 |
tgtaaatcttgatgt |
356 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40888661 |
tgtaaatcttgatgt |
40888647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 156 - 356
Target Start/End: Complemental strand, 15990327 - 15990126
Alignment:
| Q |
156 |
taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagat |
254 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
15990327 |
taaggtaagggctctagtcttgaccatgatttaactgaaaatgatagattatgacgttgaatttgatatgcttcttgatttaatggatgagtgaaaagaa |
15990228 |
T |
|
| Q |
255 |
taattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgat |
354 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
15990227 |
ttattatgttttattaattttcttgtagttgataattataagaattggtgggttgcaatcttgttaaagtatgtgatttgatgaatgtgtaaatcttgat |
15990128 |
T |
|
| Q |
355 |
gt |
356 |
Q |
| |
|
|| |
|
|
| T |
15990127 |
gt |
15990126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 168 - 356
Target Start/End: Original strand, 29453654 - 29453846
Alignment:
| Q |
168 |
tctagtcttgaccatgatttaagtgaaaatgatagat----tatgacgttggatttgatatgcttcttgattcatggatgagtgaaaagattaattatgt |
263 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29453654 |
tctagttttgaccatg-tttaaatgaaaatgatagatagattatgacattgaatttgatatgcttcttgattcatggatgagtgaaaagatttattatgt |
29453752 |
T |
|
| Q |
264 |
ttt-attaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgt |
356 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
29453753 |
ttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgt |
29453846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 255
Target Start/End: Complemental strand, 52641489 - 52641389
Alignment:
| Q |
156 |
taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattc-atggatgagtgaaaagat |
254 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
52641489 |
taaggtaagggctctagttttgaccatgatttaattgaaaatgatagattatgatgttgaatttgatatgcttcttgactcaatggatgagtgaaaagat |
52641390 |
T |
|
| Q |
255 |
t |
255 |
Q |
| |
|
| |
|
|
| T |
52641389 |
t |
52641389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 352
Target Start/End: Complemental strand, 19544673 - 19544604
Alignment:
| Q |
283 |
ttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttg |
352 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
19544673 |
ttgataaatataagaatttgtgagttgcaattttgttaaagtatgtgatttgaagaatgtgtaaatcttg |
19544604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 19544805 - 19544712
Alignment:
| Q |
168 |
tctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattc-atggatgagtgaaaagattaattat |
261 |
Q |
| |
|
||||||| ||| |||||| ||| ||||| |||||| |||||| |||| ||| ||||||||| ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
19544805 |
tctagtcatgatcatgatctaaatgaaagtgataggttatgatgttgaatt-gatatgcttattgattcgatggatgagtgaaaagatttattat |
19544712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 11650683 - 11650602
Alignment:
| Q |
156 |
taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca |
237 |
Q |
| |
|
|||||||| || | ||||||| |||||||||||| |||||| || | || ||| ||| |||||||||||||||||||||| |
|
|
| T |
11650683 |
taaggtaagggctatagtcttaaccatgatttaaaagaaaataattggttgtgatattgaatttgatatgcttcttgattca |
11650602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 52641377 - 52641309
Alignment:
| Q |
283 |
ttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatctt |
351 |
Q |
| |
|
||||||| |||| ||||| |||| |||||||||||||||| || || ||| ||||||| ||| |||||| |
|
|
| T |
52641377 |
ttgataaatataagaatttgtgaattgcaattttgttaaaatacgtgatttgatgaatatgtgaatctt |
52641309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 142 - 356
Target Start/End: Complemental strand, 27977321 - 27977107
Alignment:
| Q |
142 |
ggaaggaaagcgcttaaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tgg |
240 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||| |||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||| | ||| |
|
|
| T |
27977321 |
ggaaggaaagcgtctaaggtaagggctctagtcttaaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatgg |
27977223 |
T |
|
| Q |
241 |
atgagtgaaaagattaattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
340 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
27977222 |
atgagtgaaaagatttattatgtttcattaattttcttgtagttgataattatatgaatttgtgagttgcaattttgttaaagtatgtgatttgatgaat |
27977123 |
T |
|
| Q |
341 |
gtgtaaatcttgatgt |
356 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27977122 |
gtgtaaatcttgatgt |
27977107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 142 - 356
Target Start/End: Complemental strand, 28063849 - 28063635
Alignment:
| Q |
142 |
ggaaggaaagcgcttaaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tgg |
240 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||| |||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||| | ||| |
|
|
| T |
28063849 |
ggaaggaaagcgtctaaggtaagggctctagtcttaaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatgg |
28063751 |
T |
|
| Q |
241 |
atgagtgaaaagattaattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
340 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
28063750 |
atgagtgaaaagatttattatgtttcattaattttcttgtagttgataattatatgaatttgtgagttgcaattttgttaaagtatgtgatttgatgaat |
28063651 |
T |
|
| Q |
341 |
gtgtaaatcttgatgt |
356 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28063650 |
gtgtaaatcttgatgt |
28063635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 157 - 356
Target Start/End: Complemental strand, 16131237 - 16131038
Alignment:
| Q |
157 |
aaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattcatggatgagtgaaaagatta |
256 |
Q |
| |
|
||||||| || |||||||||||||||| ||||| |||||||||||| |||||| | || ||| || |||||||||||||||| |||||||||||||||| |
|
|
| T |
16131237 |
aaggtaagggctctagtcttgaccatggtttaattgaaaatgataggttatgatgctgaattcgacatgcttcttgattcatagatgagtgaaaagattt |
16131138 |
T |
|
| Q |
257 |
attatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgt |
356 |
Q |
| |
|
| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
16131137 |
actatattttattaatttttttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgt |
16131038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 125 - 352
Target Start/End: Original strand, 22403714 - 22403954
Alignment:
| Q |
125 |
ggtttagagttttgcttggaaggaaagcgcttaaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatat |
224 |
Q |
| |
|
||||||||||| ||| ||||| |||| || |||||| || ||||||||| |||||||||||| ||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
22403714 |
ggtttagagttcggctaggaagaaaagatctcgaggtaagggctctagtctttaccatgatttaactgaaaataatagattatgatgttgaatttgatat |
22403813 |
T |
|
| Q |
225 |
gcttcttgattc-------------atggatgagtgaaaagattaattatgttttattaattttcttgtagttgataattatatgaattggtgagttgca |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||| |||||| |
|
|
| T |
22403814 |
gcttcttgattcgatggatgattcgatggatgagtgaaaagatttattatgttttattaattttcttgaagttaataattataagaattggtgggttgca |
22403913 |
T |
|
| Q |
312 |
attttgttaaagtatgtaattagatgaatgtgtaaatcttg |
352 |
Q |
| |
|
|| |||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
22403914 |
atcttgtaaaagtatgtgatttgatgaatgtgtaaatcttg |
22403954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 28497349 - 28497230
Alignment:
| Q |
156 |
taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattcatggatgagtgaaaagatt |
255 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |||||||||||| |||||| |||| ||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
28497349 |
taaggtaagggctctagtcttgaccatgatttaattgaaaatgataggttatgatgttgaattcgacatgcttcttgattcatgaatgagtgaaaagatt |
28497250 |
T |
|
| Q |
256 |
aattatgttttattaatttt |
275 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28497249 |
tattatgttttattaatttt |
28497230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 171 - 340
Target Start/End: Complemental strand, 29046702 - 29046535
Alignment:
| Q |
171 |
agtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttga-ttcatggatgagtgaaaagattaattatgttttatt |
269 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||||||| |||| |||||||||||| ||||| || |||||||| |||||| ||| ||| | ||||||| |
|
|
| T |
29046702 |
agtctagaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgctccttgatttaatggatgattgaaaatatttattgtattttatt |
29046604 |
T |
|
| Q |
270 |
aattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
340 |
Q |
| |
|
| |||||||||||||| |||| || ||||||||||||||||||||||||| || |||| ||| ||||||| |
|
|
| T |
29046603 |
atttttcttgtagttgctaat--taagaattggtgagttgcaattttgttagagcatgtgatttgatgaat |
29046535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 156 - 347
Target Start/End: Original strand, 29587572 - 29587765
Alignment:
| Q |
156 |
taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaa-ga |
253 |
Q |
| |
|
|||||||| || |||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||| | |||||||||||||| || |
|
|
| T |
29587572 |
taaggtaagggctctagtcttgaccatgatttgaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaaaga |
29587671 |
T |
|
| Q |
254 |
ttaattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaa |
347 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
29587672 |
tttattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaa |
29587765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 157 - 356
Target Start/End: Original strand, 9745123 - 9745322
Alignment:
| Q |
157 |
aaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagatt |
255 |
Q |
| |
|
||||||| || |||||||||||||||| || ||| |||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
9745123 |
aaggtaagggctctagtcttgaccatgtttaaag-gaaaatgatagattatgatgttgaatttgatatgcttcttgattcaatggatgagtgaaaatatt |
9745221 |
T |
|
| Q |
256 |
aattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatg |
355 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
9745222 |
tattgtgttttattatttttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatg |
9745321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 168 - 355
Target Start/End: Original strand, 8311740 - 8311930
Alignment:
| Q |
168 |
tctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattc-atggatgagtgaaaagattaattatgtttt |
266 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||| |||| |||||| |||||||||||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
8311740 |
tctagtcttgaccatgatttaactgaaaataatagattatgatgttgaatttgacatgcttcttgattcgatggatgggtgaaaagatttattatgtttt |
8311839 |
T |
|
| Q |
267 |
-attaattttctt-gtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatg |
355 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| ||| ||||||||| |||| |||||| |
|
|
| T |
8311840 |
tattacttttctttgtagttgataattataagaattggtgatttgcaattttgttaaagtatgtgatttgatgaatgttgaaatattgatg |
8311930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 156 - 340
Target Start/End: Complemental strand, 10530297 - 10530113
Alignment:
| Q |
156 |
taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagat |
254 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
10530297 |
taaggtaagggctctagtcttgaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagat |
10530199 |
T |
|
| Q |
255 |
taattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
340 |
Q |
| |
|
| || |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| |
|
|
| T |
10530198 |
ttatcgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaattttgttagagcatgtgatttgatgaat |
10530113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 13167880 - 13168007
Alignment:
| Q |
155 |
ttaaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttga-ttcatggatgagtgaaaaga |
253 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
13167880 |
ttaaggtaagggctctagtcttgaccatgatttaagtgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagggaaaaga |
13167979 |
T |
|
| Q |
254 |
ttaattatgttttattaattttcttgta |
281 |
Q |
| |
|
|| ||| |||||||||| ||| |||||| |
|
|
| T |
13167980 |
tttattgtgttttattattttgcttgta |
13168007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 10529571 - 10529487
Alignment:
| Q |
272 |
ttttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgt |
356 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
10529571 |
tttttttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgt |
10529487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 46002887 - 46002797
Alignment:
| Q |
170 |
tagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattc-atggatgagtgaaaagattaatt |
259 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||| || ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46002887 |
tagtcttgatcatgatttaaatgaaaataataggttgtgatattgaatttgatatgcttcttgattcaatggatgagtgaaaagattaatt |
46002797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 31211100 - 31211192
Alignment:
| Q |
168 |
tctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttga-ttcatggatgagtgaaaagattaatt |
259 |
Q |
| |
|
||||||||||| |||||| || ||||||| |||| |||||| || |||||||||||||||||| || || |||| ||||| ||||||||| |
|
|
| T |
31211100 |
tctagtcttgatcatgatctagatgaaaataataggttatgatattaaatttgatatgcttcttgatttaatagatgcgtgaagagattaatt |
31211192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 158 - 356
Target Start/End: Original strand, 2023 - 2221
Alignment:
| Q |
158 |
aggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagatta |
256 |
Q |
| |
|
|||||| || ||||||||||||||| |||||| |||||| ||||||||||| |||| |||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
2023 |
aggtaagggctctagtcttgaccat-atttaaatgaaaacaatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagattt |
2121 |
T |
|
| Q |
257 |
attatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
2122 |
attatgttttattaattttcttgtagttgataattatatgaattggtgacttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgt |
2221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 156 - 356
Target Start/End: Complemental strand, 21232005 - 21231805
Alignment:
| Q |
156 |
taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagat |
254 |
Q |
| |
|
|||||||| || ||||||||||||| || ||||| ||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
21232005 |
taaggtaatggctctagtcttgaccgtg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagat |
21231907 |
T |
|
| Q |
255 |
taattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgat |
354 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
21231906 |
ttattatgttttattaattttcttgtagttgataattatatgaattggtgagttccaattttgttaaagtatgtgattttatgattgtgtaaatcttgat |
21231807 |
T |
|
| Q |
355 |
gt |
356 |
Q |
| |
|
|| |
|
|
| T |
21231806 |
gt |
21231805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 156 - 340
Target Start/End: Complemental strand, 9818334 - 9818150
Alignment:
| Q |
156 |
taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagat |
254 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
9818334 |
taaggtaagggctctagtcttgaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagtgaaaagat |
9818236 |
T |
|
| Q |
255 |
taattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
340 |
Q |
| |
|
| || |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| |
|
|
| T |
9818235 |
ttatcgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaattttgttagagcatgtgatttgatgaat |
9818150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 165 - 340
Target Start/End: Complemental strand, 42077619 - 42077444
Alignment:
| Q |
165 |
ggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagattaattatgt |
263 |
Q |
| |
|
||||||||||||||||||| ||||| ||| ||||||||||||||| |||| |||||||| ||||||||||| | |||||||||||||||||| ||| ||| |
|
|
| T |
42077619 |
ggttctagtcttgaccatg-tttaaatgagaatgatagattatgatgttgaatttgatacgcttcttgatttaatggatgagtgaaaagatttattgtgt |
42077521 |
T |
|
| Q |
264 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
340 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| |
|
|
| T |
42077520 |
tttattatttttcttgtagttgttaattataagaattggtgagttgcaattttgttagagcatgtgatttgatgaat |
42077444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 9881084 - 9881215
Alignment:
| Q |
155 |
ttaaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaaga |
253 |
Q |
| |
|
||||||||| || | ||||||||| |||| ||| | ||||||| ||||||||||| || ||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
9881084 |
ttaaggtaagggctatagtcttgatcatgttttgaatgaaaataatagattatgatcttaaatttgatatgcttatcgattcaatggatgagtgaaaaga |
9881183 |
T |
|
| Q |
254 |
ttaattatgttttattaattttcttgtagttg |
285 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| |
|
|
| T |
9881184 |
tttactatgttttattaattttcttgtagttg |
9881215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 24423234 - 24423323
Alignment:
| Q |
169 |
ctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagattaat |
258 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||| ||| |||| |||||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
24423234 |
ctagtcttgaccatgatttaactgaaaatgatagtttatgatattgaattttgtatgcttctt-attcattggatgagtgaagagattaat |
24423323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 9881211 - 9881262
Alignment:
| Q |
305 |
agttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgt |
356 |
Q |
| |
|
||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
9881211 |
agttgtaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgt |
9881262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 156 - 340
Target Start/End: Complemental strand, 41943174 - 41942990
Alignment:
| Q |
156 |
taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagat |
254 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||| |||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
41943174 |
taaggcaaaggctctagtcttgaccatg-tttaaatgaaaatgatagattatgttgttgaatttgatatgcttcttgatttaatggatgagtgaaaagat |
41943076 |
T |
|
| Q |
255 |
taattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
340 |
Q |
| |
|
| ||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| |
|
|
| T |
41943075 |
ttattgtgttttattatttttcttgtagttgctaattataagaattggtgagttgcaattttgttagagcatgtgatttgatgaat |
41942990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 3295304 - 3295407
Alignment:
| Q |
168 |
tctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttga-ttcatggatgagtgaaaagattaattatgtttt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| || ||||||||| ||||||||| ||| |||||| |
|
|
| T |
3295304 |
tctagtcttgaccatgatttaagtgaaactgatagattatgatgttgaatttgatatgcttcttgatttaatggatgagagaaaagatttattgtgtttt |
3295403 |
T |
|
| Q |
267 |
atta |
270 |
Q |
| |
|
|||| |
|
|
| T |
3295404 |
atta |
3295407 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 31519254 - 31519155
Alignment:
| Q |
157 |
aaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattc-atggatgagtgaaaagatt |
255 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
31519254 |
aaggtaaaggctctagtcttgaccatgatttaattgaaaatgataggttatgacgttgaatttgatatgcttcttgactcaatagatgagtgaaaagatt |
31519155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 220 - 340
Target Start/End: Complemental strand, 10336177 - 10336056
Alignment:
| Q |
220 |
gatatgcttcttgattca-tggatgagtgaaaagattaattatgttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgt |
318 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| | | |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
10336177 |
gatatgcttcttgatttaatggatgagtgaaaagatttagtgtgttttattatttttcttgtagttgcaaattataagaattggtgagttgcaattttgt |
10336078 |
T |
|
| Q |
319 |
taaagtatgtaattagatgaat |
340 |
Q |
| |
|
|| || |||| ||| ||||||| |
|
|
| T |
10336077 |
tagagcatgtgatttgatgaat |
10336056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 10344801 - 10344738
Alignment:
| Q |
156 |
taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttg |
220 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
10344801 |
taaggtaagggttctagtcttgaccatt-tttaaatgaaaatgatagattatgatgttgaatttg |
10344738 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 163 - 320
Target Start/End: Original strand, 107861 - 108018
Alignment:
| Q |
163 |
aaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttgattca-tggatgagtgaaaagattaattat |
261 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||| ||||||| | |||||||||||||||||| ||| | |
|
|
| T |
107861 |
aaggctctagtcttgaccatg-tttaaatgaaaatgatagattatgatgttgaatttgatatgctccttgatttaatggatgagtgaaaagatttattgt |
107959 |
T |
|
| Q |
262 |
gttttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgtta |
320 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
107960 |
attttattatttttgttgtagttgctaattataagaattggtgagttgcaattttgtta |
108018 |
T |
|
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Target: scaffold0259 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 2660 - 2545
Alignment:
| Q |
156 |
taaggtaaaggttctagtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttga-ttcatggatgagtgaaaagat |
254 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||| |||||||||||| |||||| |||| |||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
2660 |
taaggtaagggctctagttttgaccatgatttaattgaaaatgataggttatgatgttgaatttgacatgcttcttgatttaatggatgagtgaaaagat |
2561 |
T |
|
| Q |
255 |
taattatgttttatta |
270 |
Q |
| |
|
| ||| |||||||||| |
|
|
| T |
2560 |
ttattgtgttttatta |
2545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 148443 - 148369
Alignment:
| Q |
266 |
tattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
340 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
148443 |
tattatttttcttgtagttgctaattataagaattggtgagttgcaattttgttagagtatgtgatttgatgaat |
148369 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 18927243 - 18927183
Alignment:
| Q |
172 |
gtcttgaccatgatttaagtgaaaatgatagattatgacgttggatttgatatgcttcttg |
232 |
Q |
| |
|
||||||||||| ||||| ||||||| |||| |||||| |||| ||||||||||||||||| |
|
|
| T |
18927243 |
gtcttgaccattatttagatgaaaataataggttatgaagttgaatttgatatgcttcttg |
18927183 |
T |
|
Back To:
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