View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9480_low_8 (Length: 319)
Name: NF9480_low_8
Description: NF9480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9480_low_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 216 - 319
Target Start/End: Complemental strand, 9303518 - 9303415
Alignment:
| Q |
216 |
cgtaaccaaatcaaaaccaagaccacataacatcaaaaatcaccatcacgaacaacatcaccaaaaccagtcaaccaaccacacaaagcaataacaccaa |
315 |
Q |
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| T |
9303518 |
cgtaaccaaatcaaaaccaagaccacataacatcaaaaatcaccatcacgaacatcaccaccaaaaccagtcaaccaaccacacaaagcaataacatcaa |
9303419 |
T |
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| Q |
316 |
agtc |
319 |
Q |
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|||| |
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| T |
9303418 |
agtc |
9303415 |
T |
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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 9303712 - 9303619
Alignment:
| Q |
11 |
gagatggacatcaagaaaaaacacaaggaaagctgccaaattttgcatcaa-cctaattccaaaccttgtctgataccatcataaaccagtaat |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9303712 |
gagaaggacatcaagaaaaaacacaaggaaagctgccaaattttgcatcaaccctaattccaaaccttgtctgataccatcataaaccagtaat |
9303619 |
T |
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