View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9481_high_12 (Length: 240)
Name: NF9481_high_12
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9481_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 64 - 231
Target Start/End: Complemental strand, 33382437 - 33382270
Alignment:
| Q |
64 |
taaaccagttattgaaaatgatttccaaaataaactacttgtttgaaaattcactcatcaatgaatgcaatgtaatttcaggtatgtgttgtaaaatcgc |
163 |
Q |
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| T |
33382437 |
taaaccagttattgaaaatgatttccaaaataaactacttgtttgaaaattcacccatcaatgaatgcaatgtaatttcaggtatgtgttgtaaaatcgc |
33382338 |
T |
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| Q |
164 |
aagagttaaaacacaaaccaattcgacacatagagaacattcaaacaccttacacaaataagaataat |
231 |
Q |
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| T |
33382337 |
aagagttaaaacacaaaccaattcgacacatagagaacattcaaacaccttacacaaataagaataat |
33382270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 33382486 - 33382455
Alignment:
| Q |
16 |
actttgtatttgtttaccataatgaaaatcac |
47 |
Q |
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| T |
33382486 |
actttgtatttgtttaccataatgaaaatcac |
33382455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 46663789 - 46663760
Alignment:
| Q |
18 |
tttgtatttgtttaccataatgaaaatcac |
47 |
Q |
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| T |
46663789 |
tttgtatttgtttaccataatgaaaatcac |
46663760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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