View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9481_high_13 (Length: 239)
Name: NF9481_high_13
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9481_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 7494696 - 7494833
Alignment:
| Q |
1 |
aacaagctcctacaacaactttttacaaattcataatttattgttgcgtttctacatggtaataatattaaataatcgaaagacagtaatgaaagataaa |
100 |
Q |
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| T |
7494696 |
aacaagctcctacaacaactttttacaaattcataatttattgttgcgtttctacatggtaataatattaaataatcgaaagacagtaatgaaggataaa |
7494795 |
T |
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| Q |
101 |
tttgagagaatgttggtaagtatagttgatcaacaatg |
138 |
Q |
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| T |
7494796 |
tttgagagaatgttggtaaatatagttgatcaacaatg |
7494833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 7495026 - 7495100
Alignment:
| Q |
150 |
atttgaaattggcaaagtgagttgccttgatggtcatatgatgtgagcggttttccaaactttcctccaaggagt |
224 |
Q |
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| T |
7495026 |
atttgaaattggcaaagtgagttgccttgatggtcatatgatgtgagcggttttccaaactttcctccaaggagt |
7495100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 7873802 - 7873728
Alignment:
| Q |
150 |
atttgaaattggcaaagtgagttgccttgatggtcatatgatgtgagcggttttccaaactttcctccaaggagt |
224 |
Q |
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| T |
7873802 |
atttgaaattggcaaagtgagttgccttgatggtcatatgatttgagcggttctccaaactttcctccaaggagt |
7873728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 6944498 - 6944424
Alignment:
| Q |
150 |
atttgaaattggcaaagtgagttgccttgatggtcatatgatgtgagcggttttccaaactttcctccaaggagt |
224 |
Q |
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| T |
6944498 |
atttgaaattggcaaagtgagttgccttgatggtcatatgatctgagcagttctccagcccttcctccaaggagt |
6944424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 7874051 - 7873952
Alignment:
| Q |
41 |
ttgttgcgtttctacatggtaataa-tattaaataatcgaaagacagtaatgaaagataaatttgagagaatgtt-ggtaagtatagttgatcaacaatg |
138 |
Q |
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| T |
7874051 |
ttgttgcatttttatatggtaataactattaaataatcgaaaaacagtactaaaagataaatttgatagaatgttagttaaggatagttgatcaacaatg |
7873952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 7474677 - 7474751
Alignment:
| Q |
150 |
atttgaaattggcaaagtgagttgccttgatggtcatatgatgtgagcggttttccaaactttcctccaaggagt |
224 |
Q |
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| T |
7474677 |
atttgaaattggcaaagtgagttgccttcatggtcatatgatgcgagggactttccatcctttcctccaaggagt |
7474751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 7487551 - 7487623
Alignment:
| Q |
150 |
atttgaaattggcaaagtgagttgccttgatggtcatatgatgtgagcggttttccaaactttcctccaagga |
222 |
Q |
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| T |
7487551 |
atttgaaattggtaaagtgatttgccttgatagtcatacgatgtgagtggttctccaacctttcctccaagga |
7487623 |
T |
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