View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9481_low_13 (Length: 321)
Name: NF9481_low_13
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9481_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 14740379 - 14740075
Alignment:
| Q |
1 |
tttggattatgatcattatgactgttgtacagttactatcaatgctccgaatatttcgtccttaacttgcacaagcactccgacactaaaatttgtcgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740379 |
tttggattatgatcattatgactgttgtacagttacaatcaatgctccgaatatttcgtccttaacttgcacaagcactccgacactaaaatttgtcgtg |
14740280 |
T |
|
| Q |
101 |
gttagtccgatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaacaatatcgtgctgagtgtgtatttgagctattgagtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14740279 |
gttagtccgatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaacaatatcgtgctgagtgtctatttgagctattgagtg |
14740180 |
T |
|
| Q |
201 |
cacttaaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttctcgtcatttttcattttctttagtatatttagaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740179 |
cacttaaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttctcgtcatttttcattttctttagtatatttagaaa |
14740080 |
T |
|
| Q |
301 |
tgatg |
305 |
Q |
| |
|
||||| |
|
|
| T |
14740079 |
tgatg |
14740075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 17585828 - 17586127
Alignment:
| Q |
5 |
gattatgatcattatgactgttgtacagttactatcaatgctccgaatatttcgtccttaacttgcacaagcactccgacactaaaatttgtcgtggtta |
104 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
17585828 |
gattatgatcattatgactgtcatacagttaagattgatgctccgaatatttcgtccttatcttgctcaagcactccgacactaaaatttgtcctggtta |
17585927 |
T |
|
| Q |
105 |
gtccgatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaacaatatcgtgctgagtgtgtatttgagctattgagtgcact |
204 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
17585928 |
atctgatctccattgttgatgcaaatattggtcttgagtttgactatccacaaagcgaacaatatgctgctcagtgtgtatttgagctattgagtgcact |
17586027 |
T |
|
| Q |
205 |
taaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttctcgtcatttttcattttctttagtatatttagaaatgat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| || |||| |
|
|
| T |
17586028 |
taaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatctttgtttgttttctcgtcattttt-attttctttagtatatttacaagtgat |
17586126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University