View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9481_low_17 (Length: 292)
Name: NF9481_low_17
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9481_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 31120425 - 31120699
Alignment:
| Q |
1 |
gtatcattactcttatagctagttaacatgttactaatcatatactgtcgctatcttggaactttagggtggatggagagattcaacaaggcacgacatg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31120425 |
gtatcattactcttatagctagttgacatgttactaatcatatactgtcactgtcttggaactttagggtggatggagagattcaacaaggcacgacatg |
31120524 |
T |
|
| Q |
101 |
ggatccaatacttatggagcaccaggttcgttaaacatatactagtttgacatggagagtacaaaatatatatgccatcttgagttaattccaacctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31120525 |
ggatccaatacttatggagcaccaggttcgttaaacatatactagtttgacatggagagtacaaaatatatatgccatcttgagttaattccaacctcaa |
31120624 |
T |
|
| Q |
201 |
aacttgtctacataaaggaaacatatcactttttaatgtctagatttatatagtaaagtttcagtttggattctt |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31120625 |
aacttgtctacataaaggaaacatatcactttttaatgtctagatttatatagtaaagtttcaatttggattctt |
31120699 |
T |
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