View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9481_low_19 (Length: 274)
Name: NF9481_low_19
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9481_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 50372184 - 50372369
Alignment:
| Q |
14 |
caaagggacattatggttgatgggcgttccgctagtaagaatgtgatataattaaattaatgtatgtttgtaagtagttgttccaaattacatttcaaaa |
113 |
Q |
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| T |
50372184 |
caaagggacattgtggttgatgggcgttccgctagtaagaatgtgatataattaaattaatgtatgtctgtaaatagttgttccaaattacatttcaaaa |
50372283 |
T |
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| Q |
114 |
cttcataatcaaattagacggagacagattaatggaatcgttcacacattagcgaatgtagcatcttcctctaatagctccattat |
199 |
Q |
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| T |
50372284 |
cttcataatcaaattagacggagacaaattaatgggatcgttcacacattaacgaatgtagcatcatcctataatagctccattat |
50372369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Original strand, 50372406 - 50372436
Alignment:
| Q |
201 |
tttattgaattaagtttgtctccctcaaaca |
231 |
Q |
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| T |
50372406 |
tttattgaattaagtttgtctccctcaaaca |
50372436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 33880354 - 33880398
Alignment:
| Q |
18 |
gggacattatggttgatgggcgttccgctagtaagaatgtgatat |
62 |
Q |
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| T |
33880354 |
gggacattagggttgatgggcgttccgctggtaagaatgtgatat |
33880398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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