View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9481_low_21 (Length: 253)

Name: NF9481_low_21
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9481_low_21
NF9481_low_21
[»] chr1 (2 HSPs)
chr1 (9-253)||(27423797-27424041)
chr1 (9-250)||(27402786-27403024)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 27424041 - 27423797
Alignment:
Q  9 agcagagattcttgcagctttgaaacatgttgaacatgacaattccaatccagagacttttcggtgtttttcaacaccttgcaaggataactcacatcca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27424041 agcagagattcttgcagctttgaaacatgttgaacatgacaattccaatccagagacttttcggtgttcttcaacaccttgcaaggataactcacatcca 27423942  T
Q  109 tatagctcagctaaatcccttagatttctctgaacattacatatataataaactgtcataaatcataataagattctatatttgaagctccacaaaaaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27423941 tatagctcagctaaatcccttagatttctctgaacattacatatataataaactgtcataaatcataataagattctatatttgaagctccacaaaaaat 27423842  T
Q  209 aattttgaactataaaataatagacataagcttggttatcaatat 253  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  27423841 aattttgaactataaattaatagacataagcttggttatcaatat 27423797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 27403024 - 27402786
Alignment:
Q  9 agcagagattcttgcagctttgaaacatgttgaacatgacaattccaatccagagacttttcggtgtttttcaacaccttgcaaggataactcacatcca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  27403024 agcagagattcttgcagctttgaaacatgttgaacatgacaattccaatccagagacttttcggtgttcttcaacaccttgcaaagataactcacatcca 27402925  T
Q  109 tatagctcagctaaatcccttagatttctctgaaca-ttacatatataataaactgtcataaatcataataagattctata-tttgaagctccacaaaaa 206  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| |||       ||||||||||||||| ||| ||||||| |||||| |||    
T  27402924 tatagctcagctaaatcccttagatttctctgaacatttgcatatataatacact-------atcataataagattccatattttgaagttccacagaaa 27402832  T
Q  207 ataattttgaactataaa--ataatagacataagcttggttatcaa 250  Q
    ||||  ||||||| ||||  | || | |||||||| ||||||||||    
T  27402831 ataaggttgaactgtaaactaaaacacacataagcatggttatcaa 27402786  T

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