View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9481_low_3 (Length: 381)
Name: NF9481_low_3
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9481_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 7260466 - 7260828
Alignment:
| Q |
1 |
tcttgattttgcactttttgcaagtaacttctctactcctttgatcactaagaccactttccttgatcctgttcttgtcaagaagcttaagagtattctt |
100 |
Q |
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| T |
7260466 |
tcttgattttgcactttttgcaagtaacttctctactcctttgatcactaagaccactttccttgatcctgttcttgtcaagaagcttaagagtattctt |
7260565 |
T |
|
| Q |
101 |
ggtggcagtggttaagtaactatatacgtgttccgacctcaaaccacatttccgaggtatcgtctggtttgaggtattgtgtaagtcctcgcagttttgt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| | | |||||| |
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| T |
7260566 |
ggtggcagtggttaagtaactatatatgtgttccgacctcaagtcacatttccgaggtatcttctggtttgaggtactgtgtaagtccgcacggttttgc |
7260665 |
T |
|
| Q |
201 |
tctttgtaaaaggcgtctgagcggact---aagtgtagatgttctttataaactactattgaccttgattctgaagtaatgtggaattttttggtgtacc |
297 |
Q |
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|||||||||||||| |||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7260666 |
tctttgtaaaaggcatctgagtggactaagaagtgtagatgtt-tttataaactaccattgaccttgattctgaagtaatgtggaattttttggtgtacc |
7260764 |
T |
|
| Q |
298 |
ggaacagtatgcttatattttatgttcattgatagttgttatttgattcaaccaattttcttat |
361 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7260765 |
ggaacagtatgcttatattttatgttcattgatagttgttatttgattcaaccaattttcttat |
7260828 |
T |
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