View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9481_low_34 (Length: 230)

Name: NF9481_low_34
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9481_low_34
NF9481_low_34
[»] chr3 (5 HSPs)
chr3 (1-212)||(4251557-4251768)
chr3 (1-92)||(10305207-10305298)
chr3 (1-92)||(51005029-51005120)
chr3 (96-190)||(4233899-4233993)
chr3 (96-190)||(4241842-4241939)
[»] chr4 (1 HSPs)
chr4 (1-92)||(1814299-1814390)
[»] chr5 (1 HSPs)
chr5 (1-83)||(4246387-4246469)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-93)||(142816-142908)
[»] chr2 (1 HSPs)
chr2 (1-89)||(13761283-13761371)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 4251557 - 4251768
Alignment:
Q  1 taataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgagactttttgtcgctacatataacatagcccaataaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4251557 taataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgagactttttgtcgctacatataacatagcccaataaaaa 4251656  T
Q  101 ataacttgaaattccaacattattagtaattgccgtacatttcgacacattcaaccaacctacaatcatttgcatcaccttaaaaataaaattaaaatcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4251657 ataacttgaaattccaacattattagtaattgccgtacatttcgacacattcaaccaacctacaatcatttgcatcaccttaaaaataaaattaaaatcg 4251756  T
Q  201 aaatccccaaat 212  Q
    ||||||||||||    
T  4251757 aaatccccaaat 4251768  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 10305298 - 10305207
Alignment:
Q  1 taataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgagactttttgtcgctacatataacatagccc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10305298 taataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgagactttttgtcgctacatatagcatagccc 10305207  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 51005120 - 51005029
Alignment:
Q  1 taataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgagactttttgtcgctacatataacatagccc 92  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51005120 taataactgtgaaatggaaaatggcaaaagcttataaaacataattcgtgggatattcgcgagactttttgtcgctacatatagcatagccc 51005029  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 4233899 - 4233993
Alignment:
Q  96 aaaaaataacttgaaattccaacattattagtaattgccgtacatttcgacacattcaaccaacctacaatcatttgcatcaccttaaaaataaa 190  Q
    |||||| |||||||||||||| |||||| || ||||| | ||||||||||||| |||| |||||| |||||||||| |||||||||| |||||||    
T  4233899 aaaaaaaaacttgaaattccatcattatgagcaattggcctacatttcgacacgttcacccaaccaacaatcatttacatcaccttagaaataaa 4233993  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 4241842 - 4241939
Alignment:
Q  96 aaaaaataacttgaaattccaacattattagtaattgccgtacatttcgacacattc----aaccaacctacaatcatttgcatcaccttaaaaataaa 190  Q
    |||||| ||||| |||||||| |||||| || ||| ||| ||||||||||||| |||    | |||||| ||||||||||||||||||| | |||||||    
T  4241842 aaaaaaaaacttaaaattccatcattatgagcaatggcc-tacatttcgacacgttcgttcacccaaccaacaatcatttgcatcacctgagaaataaa 4241939  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1814299 - 1814390
Alignment:
Q  1 taataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgagactttttgtcgctacatataacatagccc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  1814299 taataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattagcgagactttctgtcgctacatatagcatagccc 1814390  T

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Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4246387 - 4246469
Alignment:
Q  1 taataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgagactttttgtcgctacatata 83  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4246387 taataactgtgaaatggaaaacggcaaaaacttataaaacataattcgtgggatattcgcgagactttttgtcgctacatata 4246469  T

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Target: scaffold0024 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 142908 - 142816
Alignment:
Q  1 taataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgagactttttgtcgctacatataacatagccca 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||  ||||||||    
T  142908 taataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgatactttttgtcgcgacatatagtatagccca 142816  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 13761371 - 13761283
Alignment:
Q  1 taataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgagactttttgtcgctacatataacatag 89  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||    
T  13761371 taataactttgaaatggaaaacggcaaaagcttataaaacataatttgtgagatattcgcgaaactttttgtcgctacatatagcatag 13761283  T

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