View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9481_low_36 (Length: 228)
Name: NF9481_low_36
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9481_low_36 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 27423467 - 27423695
Alignment:
| Q |
7 |
aaatcatgaatagaaaaacctatttt-------ctaaattgtgaattgaatcttattatgaatcgtaaaatatataaccaataaaaataagatatttatt |
99 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27423467 |
aaatcatgaatagaaaaacctattttcgtttttctaaattgtgaattgaatcttattatgaatcgtaaaatatatcaccaataaaaataagatatttatt |
27423566 |
T |
|
| Q |
100 |
agaaaaactactgacataacaaaattttaagttgatagtaaatggtatatgaacctcaatgcaaagttgacaacaaaagtggccgactatactaggatga |
199 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27423567 |
agaaaaacgagtgacataacaaaattttaagttgatagtaaatggtatatgaacctcaatgcaaagttgacaacaaaagtggccgactatactaggatga |
27423666 |
T |
|
| Q |
200 |
gttaatattcatcatagtaaatcaagatt |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27423667 |
gttaatattcatcatagtaaatcaagatt |
27423695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 6174950 - 6174996
Alignment:
| Q |
27 |
tattttctaaattgtgaattgaatcttattatgaatcgtaaaatata |
73 |
Q |
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| T |
6174950 |
tattttccaaattgtgaatttaatcttattatgagtcgtataatata |
6174996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 4377078 - 4377013
Alignment:
| Q |
28 |
attttctaaattgtgaattgaatcttattatgaatcgtaaaatatataaccaataaaaataagata |
93 |
Q |
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| T |
4377078 |
attttcttaatcgtgaattgaatcttgttatgaatcctaagatacattatcaataaaaatacgata |
4377013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 5244281 - 5244326
Alignment:
| Q |
38 |
ttgtgaattgaatcttattatgaatcgtaaaatatataaccaataa |
83 |
Q |
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| T |
5244281 |
ttgtgaattgaatcttattatcaattgtaagatatataatcaataa |
5244326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 161675 - 161615
Alignment:
| Q |
24 |
acctattttctaaattgtgaattgaatcttattatgaatcgtaaaatatataaccaataaa |
84 |
Q |
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| T |
161675 |
acctattttctgaattgtgaattgaatcttattgtgaatcgtaagataaattaccaataaa |
161615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 7896309 - 7896375
Alignment:
| Q |
21 |
aaaacctattttctaaattgtgaattgaatcttattatgaatcgtaaaatatataaccaataaaaat |
87 |
Q |
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|||| |||||||| ||||||||||| ||||||||||||||||| ||| |||||| || ||||||||| |
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| T |
7896309 |
aaaaactattttccaaattgtgaatcgaatcttattatgaatcttaagatatattactaataaaaat |
7896375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 51395830 - 51395761
Alignment:
| Q |
27 |
tattttctaaattgtgaattgaatcttattatgaatcgtaaaatatataaccaataaaaataagatattt |
96 |
Q |
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|||||||||||| ||||| ||||| ||||||||||| ||| |||||| |||||||||||| ||||||| |
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| T |
51395830 |
tattttctaaatcctgaatcgaatcctattatgaatcataagatatatttccaataaaaatatgatattt |
51395761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 9844237 - 9844288
Alignment:
| Q |
36 |
aattgtgaattgaatcttattatgaatcgtaaaatatataaccaataaaaat |
87 |
Q |
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|
|||||||||| ||||||||||||||||||||||| | || |||||||||||| |
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|
| T |
9844237 |
aattgtgaatcgaatcttattatgaatcgtaaaacacattaccaataaaaat |
9844288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 32117948 - 32117874
Alignment:
| Q |
12 |
atgaatagaaaaacctattttctaaattgtgaattgaatcttattatgaatcgtaaaatatataaccaataaaaa |
86 |
Q |
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|||||||| || ||||||||||| ||| |||||||||||||||||| ||| |||| ||| || ||||||||||| |
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| T |
32117948 |
atgaataggaagacctattttctgaatcctgaattgaatcttattatcaattgtaagatacattaccaataaaaa |
32117874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 14240127 - 14240176
Alignment:
| Q |
36 |
aattgtgaattgaatcttattatgaatcgtaaaatatataaccaataaaa |
85 |
Q |
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|
||||||||||| ||||||||||||||| |||||||| || ||||||||| |
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| T |
14240127 |
aattgtgaattcaatcttattatgaattgtaaaatacattgccaataaaa |
14240176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 29512023 - 29511982
Alignment:
| Q |
26 |
ctattttctaaattgtgaattgaatcttattatgaatcgtaa |
67 |
Q |
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||||||||| |||||||||| |||||||||||||||| |||| |
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| T |
29512023 |
ctattttctgaattgtgaatagaatcttattatgaatagtaa |
29511982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 12048498 - 12048428
Alignment:
| Q |
26 |
ctattttctaaattgtgaattgaatcttattatgaatcgtaaaatatataaccaataaaaataagatattt |
96 |
Q |
| |
|
|||||||| |||||||| || ||||||||| ||||||||||| |||||| || | |||||||| ||||||| |
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| T |
12048498 |
ctattttccaaattgtggatcgaatcttataatgaatcgtaagatatattactattaaaaatatgatattt |
12048428 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 20553769 - 20553833
Alignment:
| Q |
24 |
acctattttctaaattgtgaattgaatcttattatgaatcgtaaaatatataaccaataaaaata |
88 |
Q |
| |
|
||||||||||| |||||||||| ||||| | ||| ||||||||| ||| || ||| ||||||||| |
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| T |
20553769 |
acctattttctgaattgtgaatagaatcctcttacgaatcgtaagatacattaccgataaaaata |
20553833 |
T |
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