View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9481_low_4 (Length: 379)
Name: NF9481_low_4
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9481_low_4 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 48020104 - 48020460
Alignment:
| Q |
8 |
aagcaaaggcggttctggttgatggtgtgagtcgtgttgaagaagatgaggaggatttggatccgaagattggtcgagattgtgttgatgaaccggggaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020104 |
aagcaaaggcggttctggttgatggtgtgagtcgtgttgaagaagatgaggaggatttggatccgaagattggtcgagattgtgttgatgaaccggggaa |
48020203 |
T |
|
| Q |
108 |
attggggttggtggagtcgaggattatggggagggtgaaggaggaatttggggtggtgggtgaaaatgggtttgtgggtttgggaggttttaagaatgtg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020204 |
attggggttggtggagtcgaggattatggggagggtgaaggaggaatttggggtggtgggtgaaaatgggtttgtgggtttgggaggttttaagaatgtg |
48020303 |
T |
|
| Q |
208 |
aggaatgtttatgattggaaaggtttgaaattggaagtggatgagactcattttgattttggaactttgtttgagattgaatgtgaaagttctgatcctg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020304 |
aggaatgtttatgattggaaaggtttgaaattggaagtggatgagactcattttgattttggaactttgtttgagattgaatgtgaaagttctgatcctg |
48020403 |
T |
|
| Q |
308 |
aagaagccaaacgcattcttgaggagttcttaaaggagaatggaattgattattcat |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48020404 |
aagaagccaaacgcattcttgaggagttcttgaaggagaatggaattgattattcat |
48020460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 38 - 364
Target Start/End: Original strand, 48024920 - 48025249
Alignment:
| Q |
38 |
gtcgtgttgaagaagatgaggaggatttggatccgaagattggtcgagattgtgttgatgaaccggggaaattg---gggttggtggagtcgaggattat |
134 |
Q |
| |
|
||||||| || ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| || || ||||| || |||||||| |
|
|
| T |
48024920 |
gtcgtgtagaggaagacgaggaagatttggatccgaagattggtcgagattgcgttgatgaaccggggaagttgttgggttttgtggattccaggattat |
48025019 |
T |
|
| Q |
135 |
ggggagggtgaaggaggaatttggggtggtgggtgaaaatgggtttgtgggtttgggaggttttaagaatgtgaggaatgtttatgattggaaaggtttg |
234 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| || | ||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
48025020 |
ggggagagtgaaggaggaatttggggtggttggtaaaaatgggtttgtgggtttaggggattttaggaatgtgaggaatgtttatgaatggaaaggtttg |
48025119 |
T |
|
| Q |
235 |
aaattggaagtggatgagactcattttgattttggaactttgtttgagattgaatgtgaaagttctgatcctgaagaagccaaacgcattcttgaggagt |
334 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
48025120 |
aaattggaagtagatgaaactggttttgattttgggactttgtttgagattgagtgtgagagttctgatcctgaagaagctaaacggattctggaggagt |
48025219 |
T |
|
| Q |
335 |
tcttaaaggagaatggaattgattattcat |
364 |
Q |
| |
|
| || |||||||||| |||||||||||||| |
|
|
| T |
48025220 |
ttttgaaggagaatgaaattgattattcat |
48025249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 38 - 364
Target Start/End: Original strand, 13694 - 14020
Alignment:
| Q |
38 |
gtcgtgttgaagaagatgaggaggatttggatccgaagattggtcgagattgtgttgatgaaccggggaaattggggttggtggagtcgaggattatggg |
137 |
Q |
| |
|
||||||| || ||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
13694 |
gtcgtgtagaggaagacgaggaagatttggatccgaagattggtcgagattccgttgatgaactggggaagttgggttttgtggattcgaggattatggg |
13793 |
T |
|
| Q |
138 |
gagggtgaaggaggaatttggggtggtgggtgaaaatgggtttgtgggttt-gggaggttttaagaatgtgaggaatgtttatgattggaaaggtttgaa |
236 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||| || |||| |||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13794 |
gagagtgaaggaggaatttggggtggtgggtaaaaatgggtttgtgggattagggaagttt-aggaatgtgaggaatgtttatgaatggaaaggtttgaa |
13892 |
T |
|
| Q |
237 |
attggaagtggatgagactcattttgattttggaactttgtttgagattgaatgtgaaagttctgatcctgaagaagccaaacgcattcttgaggagttc |
336 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
13893 |
attggaagttgatgaaactggttttgattttgggactttgtttgagattgagtgtgaaagctctgatcctgaagaagctaaacagattctggaggagttt |
13992 |
T |
|
| Q |
337 |
ttaaaggagaatggaattgattattcat |
364 |
Q |
| |
|
|| |||||||||| |||||||||||||| |
|
|
| T |
13993 |
ttgaaggagaatgaaattgattattcat |
14020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 49 - 364
Target Start/End: Original strand, 51934535 - 51934850
Alignment:
| Q |
49 |
gaagatgaggaggatttggatccgaagattggtcgagattgtgttgatgaaccggggaaattggggttggtggagtcgaggattatggggagggtgaagg |
148 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||| ||||| || ||||| ||||||||||||||||| ||||||| |
|
|
| T |
51934535 |
gaagacgaggaagatttggatccgaagattggtcgagattccgttgatgaaccagggaagttgggttttgtggattcgaggattatggggagagtgaagg |
51934634 |
T |
|
| Q |
149 |
aggaatttggggtggtgggtgaaaatgggtttgtgggtttgggaggttttaagaatgtgaggaatgtttatgattggaaaggtttgaaattggaagtgga |
248 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| || | | ||||| |||||||| |||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
51934635 |
aggaatttggggtggtgggtaaaaatgggtttgtgggattagaggattttaggaatgtgatgaatgtttatgaatggaaaggtttgaaattggaagttga |
51934734 |
T |
|
| Q |
249 |
tgagactcattttgattttggaactttgtttgagattgaatgtgaaagttctgatcctgaagaagccaaacgcattcttgaggagttcttaaaggagaat |
348 |
Q |
| |
|
||| ||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| || ||||||||| |
|
|
| T |
51934735 |
tgaaactggttttgattttgagactttgtttgagattgagtgtgagagttctgatcctgaagaagctaaacggattctggaggagtttttgaaggagaat |
51934834 |
T |
|
| Q |
349 |
ggaattgattattcat |
364 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
51934835 |
gatattgattattcat |
51934850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University