View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9481_low_7 (Length: 342)
Name: NF9481_low_7
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9481_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 14740661 - 14740356
Alignment:
| Q |
19 |
tgtgttacccaactgtttatcagctttcccttcattgaataagttgtttttagaacttgggtcccttttgtatgttcatgatggaatttgtttctctagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740661 |
tgtgttacccaactgtttatcagctttcccttcattgaataagttgtttttagaacttgggtcccttttgtatgttcatgatggaatttgtttctctagt |
14740562 |
T |
|
| Q |
119 |
ctgaagacgttaaatctttcagatgttagatttgtggatgaaaagtcagtgcagcaacttttctctgggtgccctgtgctagaagagttgatcttgtata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740561 |
ctgaagacgttaaatctttcagatgttagatttgtggatgaaaagtcagtgcagcaacttttctctgggtgccctgtgctagaagagttgatcttgtata |
14740462 |
T |
|
| Q |
219 |
attttatttggaagaacgtaaacgagatcgctattgaaagttccacattaaggacattgaacattcattctaaatcttcttttttggattatgatcatta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740461 |
attttatttggaagaacgtaaacgagatcgctattgaaagttccacattaaggacattgaacattcattctaaatcttcttttttggattatgatcatta |
14740362 |
T |
|
| Q |
319 |
tgactg |
324 |
Q |
| |
|
|||||| |
|
|
| T |
14740361 |
tgactg |
14740356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 14728979 - 14728926
Alignment:
| Q |
176 |
cttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttgg |
229 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||| ||||||||| ||| ||||| |
|
|
| T |
14728979 |
cttttgtctgggtgccctgtcctacaagagttgaccttgtataaatttttttgg |
14728926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 17585542 - 17585847
Alignment:
| Q |
19 |
tgtgttacccaactgtttatcagctttcccttcattgaataagttgtttttagaacttgggtcccttttgtatgttcatgatggaatttgtttctctagt |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17585542 |
tgtgttacccaactgtttatcagttttcccttcattgaataagttgtttttacaacttgggtcccttttgtatgttcgtgatggaatttgtttctctagt |
17585641 |
T |
|
| Q |
119 |
ctgaagacgttaaatctttcagatgttagatttgtggatgaaaagtcagtgcagcaacttttctctgggtgccctgtgctagaagagttgatcttgtata |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17585642 |
ctgaagacgttaaatctttcatatgttagatttgtagatgagaagtctgtgcaacaacttttctctgggtgccctgtgctagaagagttgatcttgtata |
17585741 |
T |
|
| Q |
219 |
attttatttggaagaacgtaaacgagatcgctattgaaagttccacattaaggacattgaacattcattctaaatcttcttttttggattatgatcatta |
318 |
Q |
| |
|
||| ||||||| || || ||||||||||| ||||||||| |||||||| | ||||||||| |||||| ||||| |||||| ||| |||||||||||||| |
|
|
| T |
17585742 |
attgtatttggcagtacataaacgagatcactattgaaaattccacataatggacattgaccattcactctaacccttcttgtttagattatgatcatta |
17585841 |
T |
|
| Q |
319 |
tgactg |
324 |
Q |
| |
|
|||||| |
|
|
| T |
17585842 |
tgactg |
17585847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 17594508 - 17594561
Alignment:
| Q |
176 |
cttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttgg |
229 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||| ||||||||| ||| ||||| |
|
|
| T |
17594508 |
cttttgtctgggtgccctgtcctacaagagttgaccttgtataaatttttttgg |
17594561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 11062602 - 11062723
Alignment:
| Q |
38 |
tcagctttcccttcattgaataagttgtttttagaacttgggtcccttttgtatgttcatgatggaatttgtttctctagtctgaagacgttaaatcttt |
137 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
11062602 |
tcagctttccgttcattgaataagttgtttttacaacttgggtcccttttgtatgttcctgagggaatttgtttctctagcctgaagacgttaaattttt |
11062701 |
T |
|
| Q |
138 |
cagatgttagatttgtggatga |
159 |
Q |
| |
|
|| ||||||||||||| ||||| |
|
|
| T |
11062702 |
catatgttagatttgtagatga |
11062723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University