View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9481_low_9 (Length: 332)

Name: NF9481_low_9
Description: NF9481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9481_low_9
NF9481_low_9
[»] chr6 (4 HSPs)
chr6 (1-317)||(6189779-6190096)
chr6 (72-142)||(30625562-30625632)
chr6 (67-123)||(29032891-29032947)
chr6 (83-123)||(17458984-17459024)
[»] chr7 (2 HSPs)
chr7 (29-141)||(10623501-10623616)
chr7 (273-317)||(23743689-23743733)
[»] chr5 (3 HSPs)
chr5 (183-317)||(32560650-32560783)
chr5 (66-123)||(43168549-43168606)
chr5 (182-313)||(29724852-29724981)
[»] chr8 (2 HSPs)
chr8 (72-122)||(1029533-1029583)
chr8 (72-121)||(10659105-10659154)
[»] chr4 (5 HSPs)
chr4 (72-122)||(2814888-2814938)
chr4 (66-143)||(38011436-38011513)
chr4 (179-259)||(20650298-20650378)
chr4 (72-123)||(20650194-20650245)
chr4 (66-123)||(44311640-44311697)
[»] chr1 (10 HSPs)
chr1 (66-131)||(11871509-11871574)
chr1 (51-130)||(23777107-23777186)
chr1 (183-246)||(18628754-18628817)
chr1 (66-129)||(18628870-18628933)
chr1 (72-134)||(26759461-26759523)
chr1 (72-134)||(33323987-33324049)
chr1 (69-134)||(26925015-26925080)
chr1 (66-123)||(48563451-48563508)
chr1 (67-123)||(15309131-15309186)
chr1 (72-116)||(42241481-42241525)
[»] chr2 (3 HSPs)
chr2 (1-143)||(14694883-14695029)
chr2 (66-122)||(9848193-9848249)
chr2 (29-124)||(39711494-39711592)
[»] chr3 (2 HSPs)
chr3 (179-246)||(47005626-47005693)
chr3 (271-317)||(6042917-6042963)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 6189779 - 6190096
Alignment:
Q  1 tttcaaggcgtgatgtcaacctacactatggtacttcatgctcaaaggcgctttatgcttgctgggttcaaggagttgttggcacttgaattttgattcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  6189779 tttcaaggcgtgatgtcaacctacactatggtacttcatgctcaaaggagctttatgcttgctgggttcagggagttgttggtacttgaattttgattcc 6189878  T
Q  101 gtgttggcagtcgatccattcgctataattaaaccttaattatcctttgcagttatttac-annnnnnnnnnnnnnnnnaacttggtttcgcgaccgtac 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||    
T  6189879 gtgttggcggtcgatccattcgctataattaaaccttaattatcctttgcagttatttactttttattattttttttgtaacttggtttcgcgaccgtac 6189978  T
Q  200 tcaggttcgctaggttgcgttcgtgattagcgaatttttgctaggatgaattaggattggtccactaaatttattttatcacgatgtatccccttttgag 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  6189979 tcaggttcgctaggttgcgttcgtgattagcgaatttttgctaggatgaattaggattggtccactaagtttattttatcacgatgtatccctttttgag 6190078  T
Q  300 ttgtatctgggtcaggtc 317  Q
    |||||||| |||||||||    
T  6190079 ttgtatctaggtcaggtc 6190096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 30625632 - 30625562
Alignment:
Q  72 ggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgctataattaaaccttaatta 142  Q
    ||||| |||| ||||||||||||| | |||||||||| |||||||||||||| | | ||||||| ||||||    
T  30625632 ggagtagttgacacttgaattttgttaccgtgttggcggtcgatccattcgccaaacttaaaccctaatta 30625562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 29032891 - 29032947
Alignment:
Q  67 ttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgc 123  Q
    |||||||||||||||||||||||||||||||   || |||||||| ||| |||||||    
T  29032891 ttcaaggagttgttggcacttgaattttgatattgtcttggcagttgattcattcgc 29032947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 17459024 - 17458984
Alignment:
Q  83 cacttgaattttgattccgtgttggcagtcgatccattcgc 123  Q
    ||||||||||||||| |||||||||||||| ||| ||||||    
T  17459024 cacttgaattttgataccgtgttggcagtcaatcaattcgc 17458984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 10623501 - 10623616
Alignment:
Q  29 tggtacttcatgctcaaaggcgctttatgcttgctgg---gttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgcta 125  Q
    ||||| ||||||||| || | |||| ||||||||||    ||||| ||||||||||||| ||| |||||||  | ||||||||||||||||||||||| |    
T  10623501 tggtatttcatgctcgaaagagcttcatgcttgctgctttgttcagggagttgttggcaattgtattttgacactgtgttggcagtcgatccattcgcca 10623600  T
Q  126 taattaaaccttaatt 141  Q
     || ||||||||||||    
T  10623601 aaaataaaccttaatt 10623616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 23743733 - 23743689
Alignment:
Q  273 ttttatcacgatgtatccccttttgagttgtatctgggtcaggtc 317  Q
    ||||||| | || ||||||| ||||||||||||||||||||||||    
T  23743733 ttttatcgccatttatccccatttgagttgtatctgggtcaggtc 23743689  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 317
Target Start/End: Original strand, 32560650 - 32560783
Alignment:
Q  183 tggtttcgcgaccgtactcaggttcgctaggttgcgttcgtgattagcgaatttttgctaggatgaattaggattggtccactaaatttattttatcacg 282  Q
    |||||||||| |||||| | |||||||| | ||||| | |||||| | ||||||||| |||  ||| ||||| ||| ||||||| ||||| | |||||||    
T  32560650 tggtttcgcgcccgtacgcgggttcgctggattgcgct-gtgatttgtgaatttttgttagattga-ttagggttgatccactagatttaatgtatcacg 32560747  T
Q  283 atgtatcccc-ttttgagttgtatctgggtcaggtc 317  Q
    |||||||||| ||||| ||| |||||||||||||||    
T  32560748 atgtatcccctttttgggttttatctgggtcaggtc 32560783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 43168606 - 43168549
Alignment:
Q  66 gttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgc 123  Q
    ||||| |||||||||| || |||||||||||| |||||||| |||| |||||||||||    
T  43168606 gttcagggagttgttgacatttgaattttgataccgtgttgacagttgatccattcgc 43168549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 313
Target Start/End: Complemental strand, 29724981 - 29724852
Alignment:
Q  182 ttggtttcgcgaccgtactcaggttcgctaggttgcgttcgtgattagcgaatttttgctaggatgaattaggattggtccactaaatttattttatcac 281  Q
    |||||||||||   |||| || ||||||| ||||||| |||||||||| || | |||| ||||||  |||||| ||| ||||||| |||| |||  ||||    
T  29724981 ttggtttcgcgcatgtacgcaagttcgctgggttgcgctcgtgattagtgattgtttgttaggatagattagggttgatccactagatttgttt--tcac 29724884  T
Q  282 gatgtatccccttttgagttgtatctgggtca 313  Q
     |||||| |||  ||||||||||  |||||||    
T  29724883 tatgtattcccgattgagttgtacgtgggtca 29724852  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 1029583 - 1029533
Alignment:
Q  72 ggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcg 122  Q
    |||||||||||||||||||||||||| || ||||||| |||||||||||||    
T  1029583 ggagttgttggcacttgaattttgataccatgttggcggtcgatccattcg 1029533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 10659154 - 10659105
Alignment:
Q  72 ggagttgttggcacttgaattttgattccgtgttggcagtcgatccattc 121  Q
    ||||||||||||||||| |||||| | |||||||||  ||||||||||||    
T  10659154 ggagttgttggcacttggattttgttaccgtgttggtggtcgatccattc 10659105  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 2814938 - 2814888
Alignment:
Q  72 ggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcg 122  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||||||||    
T  2814938 ggagttgttggcacttggattttgataccgtgttggcaatcgatccattcg 2814888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 38011513 - 38011436
Alignment:
Q  66 gttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgctataattaaaccttaattat 143  Q
    ||||| |||| |||||||||||| |||||| | |||||||| | ||||||||||||||  |  |||||||||||||||    
T  38011513 gttcagggagctgttggcacttggattttgttaccgtgttgacggtcgatccattcgccttttttaaaccttaattat 38011436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 20650298 - 20650378
Alignment:
Q  179 aacttggtttcgcgaccgtactcaggttcgctaggttgcgttcgtgattagcgaatttttgctaggatgaattaggattgg 259  Q
    |||||||||||||| | |||| ||||||||||  ||||||  ||||||||| ||||||||| ||||||  |||||| ||||    
T  20650298 aacttggtttcgcgcctgtacgcaggttcgctgagttgcgcccgtgattagtgaatttttgttaggatagattagggttgg 20650378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 20650194 - 20650245
Alignment:
Q  72 ggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgc 123  Q
    |||| |||||||||||| |||||| | ||||||||||||||||||| |||||    
T  20650194 ggagctgttggcacttggattttgttaccgtgttggcagtcgatccgttcgc 20650245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 44311697 - 44311640
Alignment:
Q  66 gttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgc 123  Q
    ||||| |||| || ||||||||| |||||||| ||||| |||| ||||||||||||||    
T  44311697 gttcagggagctgatggcacttggattttgataccgtgctggcggtcgatccattcgc 44311640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 11871509 - 11871574
Alignment:
Q  66 gttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgctataatta 131  Q
    ||||| ||||||||||||||||| |||||| | ||||||| || |||||||||||||| |||||||    
T  11871509 gttcagggagttgttggcacttggattttgttaccgtgttagcggtcgatccattcgccataatta 11871574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 23777107 - 23777186
Alignment:
Q  51 ctttatgcttgctgg-gttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgctataatt 130  Q
    ||||||||||||||  ||||| |||| |||||||||||| |||||| | |||||||||| |||||||||||||| ||||||    
T  23777107 ctttatgcttgctgttgttcagggagctgttggcacttggattttg-taccgtgttggcggtcgatccattcgccataatt 23777186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 18628817 - 18628754
Alignment:
Q  183 tggtttcgcgaccgtactcaggttcgctaggttgcgttcgtgattagcgaatttttgctaggat 246  Q
    |||||||||| |||||| | ||||||||||||||||  ||||||||| ||||||||| ||||||    
T  18628817 tggtttcgcgcccgtacgcgggttcgctaggttgcgcccgtgattagtgaatttttgttaggat 18628754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 18628933 - 18628870
Alignment:
Q  66 gttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgctataat 129  Q
    ||||| |||| |||||||||||| |||||| | |||||||||| |||||||||||||| |||||    
T  18628933 gttcagggagctgttggcacttggattttgttaccgtgttggcggtcgatccattcgccataat 18628870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 26759461 - 26759523
Alignment:
Q  72 ggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgctataattaaac 134  Q
    |||| |||||||||||| |||||| | | |||||||| |||||||||||||| ||| ||||||    
T  26759461 ggagctgttggcacttggattttgttactgtgttggcggtcgatccattcgccatatttaaac 26759523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 33323987 - 33324049
Alignment:
Q  72 ggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgctataattaaac 134  Q
    |||| |||||||||||| |||| | | | |||||||| |||||||||||||| ||||||||||    
T  33323987 ggagctgttggcacttggatttcgttactgtgttggcggtcgatccattcgccataattaaac 33324049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 26925080 - 26925015
Alignment:
Q  69 caaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgctataattaaac 134  Q
    ||||||| | |||||||||| |||||| | | |||||||| |||||||||||||| ||| ||||||    
T  26925080 caaggagctattggcacttggattttgttactgtgttggcggtcgatccattcgccatatttaaac 26925015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 48563451 - 48563508
Alignment:
Q  66 gttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgc 123  Q
    ||||| |||||||||||||||||||||||||| |  ||||| |  |||||||||||||    
T  48563451 gttcagggagttgttggcacttgaattttgatactatgttgacgatcgatccattcgc 48563508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 15309131 - 15309186
Alignment:
Q  67 ttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgc 123  Q
    |||| |||||||||||| |||| |||||| | |||||||||| ||||||||||||||    
T  15309131 ttcagggagttgttggcgcttggattttg-taccgtgttggcggtcgatccattcgc 15309186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 42241481 - 42241525
Alignment:
Q  72 ggagttgttggcacttgaattttgattccgtgttggcagtcgatc 116  Q
    ||||||||||||||||| |||||| | |||||||||| |||||||    
T  42241481 ggagttgttggcacttggattttgttaccgtgttggcggtcgatc 42241525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 14695029 - 14694883
Alignment:
Q  1 tttcaaggcgtgatgtcaacctacactatggtacttcatgctcaaaggcgcttt-atgcttgctgg---gttcaaggagttgttggcacttgaattttga 96  Q
    |||||||| ||  |||| ||||||||| ||||| ||||||||| || | ||||| ||||||| ||    ||||| |||| || |||||||||||||||||    
T  14695029 tttcaaggtgtcttgtctacctacactctggtaattcatgctcgaaagagcttttatgcttgttgctttgttcatggagctgatggcacttgaattttga 14694930  T
Q  97 ttccgtgttggcagtcgatccattcgctataattaaaccttaattat 143  Q
    | || |||| || ||||||||||||||   ||||||||| |||||||    
T  14694929 taccatgtttgcggtcgatccattcgccgaaattaaaccctaattat 14694883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 9848193 - 9848249
Alignment:
Q  66 gttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcg 122  Q
    ||||| ||||||||||||||||| || ||| | ||||||||||  ||||||||||||    
T  9848193 gttcagggagttgttggcacttggatgttgttgccgtgttggcgatcgatccattcg 9848249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 39711592 - 39711494
Alignment:
Q  29 tggtacttcatgctcaaaggcgctttatgcttgctgg---gttcaaggagttgttggcacttgaattttgattccgtgttggcagtcgatccattcgct 124  Q
    ||||||||||||||  || | | |||||||||||||    |||||  ||| |||||||||||| |||||| | |||||||||| ||| |||||||||||    
T  39711592 tggtacttcatgcttgaaagagttttatgcttgctgctttgttcagagagctgttggcacttggattttgttaccgtgttggcggtctatccattcgct 39711494  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 47005693 - 47005626
Alignment:
Q  179 aacttggtttcgcgaccgtactcaggttcgctaggttgcgttcgtgattagcgaatttttgctaggat 246  Q
    ||||||||||||||  ||||| | |||||||||||||||||  |||||||| ||||||| | ||||||    
T  47005693 aacttggtttcgcgctcgtacgcgggttcgctaggttgcgtatgtgattagtgaattttggttaggat 47005626  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 6042963 - 6042917
Alignment:
Q  271 tattttatcacgatgtatccccttttgagttgtatctgggtcaggtc 317  Q
    |||||||||||| |||||| || |||| |||||||||||||||||||    
T  6042963 tattttatcacgttgtatctccgtttgggttgtatctgggtcaggtc 6042917  T

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