View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9482_low_2 (Length: 409)
Name: NF9482_low_2
Description: NF9482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9482_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 171 - 395
Target Start/End: Complemental strand, 42936415 - 42936191
Alignment:
| Q |
171 |
catatatttactgattttgctggaacaccttattggatggctcctgaggttattcactctcataatggttacagtttcaaagctgatatctggtcttttg |
270 |
Q |
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| T |
42936415 |
catatatttactgattttgctggaacaccttattggatggctcctgaggttattcactctcataatggttacagtttcaaagctgatatctggtcttttg |
42936316 |
T |
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| Q |
271 |
ggataacagctttggagttagcacatggaagaccaccactttctcatcttcctccttctaagtcattgatgctaaacattacaaagaggtttaagttttc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936315 |
ggataacagctttggagttagcacatggaagaccaccactttctcatcttcctccttctaagtcattgatgctaaacattacaaagaggtttaagttttc |
42936216 |
T |
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| Q |
371 |
tgattttgataaacatagttacaag |
395 |
Q |
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| T |
42936215 |
tgattttgataaacatagttacaag |
42936191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 42936568 - 42936456
Alignment:
| Q |
18 |
catagagatatcaaatccggtaacatccttgttgactcaaatggattagtgaaacttgcagattttggtgtttctgcttccatttatgaatcaaacaact |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936568 |
catagagatatcaaatctggtaacatccttgttgactcaaatggattagtgaaacttgcagattttggtgtttctgcttccatttatgaatcaaacaact |
42936469 |
T |
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| Q |
118 |
ctgtaggagcatg |
130 |
Q |
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| T |
42936468 |
ctgtaggagcatg |
42936456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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