View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9482_low_5 (Length: 237)

Name: NF9482_low_5
Description: NF9482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9482_low_5
NF9482_low_5
[»] chr8 (3 HSPs)
chr8 (15-183)||(37563017-37563185)
chr8 (127-222)||(37562302-37562397)
chr8 (120-222)||(13934999-13935101)
[»] chr3 (2 HSPs)
chr3 (119-222)||(51420860-51420963)
chr3 (127-222)||(51421621-51421716)
[»] chr1 (4 HSPs)
chr1 (127-222)||(38931321-38931416)
chr1 (120-222)||(38932074-38932176)
chr1 (119-166)||(47334902-47334949)
chr1 (120-186)||(40028764-40028830)
[»] chr2 (3 HSPs)
chr2 (120-187)||(7868122-7868189)
chr2 (120-166)||(5005462-5005508)
chr2 (127-187)||(36390964-36391024)
[»] chr7 (1 HSPs)
chr7 (120-162)||(46759268-46759310)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 37563185 - 37563017
Alignment:
Q  15 tctcaccttttcccctttatttctgagcctctcttagattctccattagtattgatttgatcttctttcttctcttcattcatcatttgctcaaccgttg 114  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  37563185 tctcgccttttcccctttatttatgaacctctcttagattctccattagtattgatttgatcttctttcttttcttcattcatcatttgctcaactgttg 37563086  T
Q  115 acatcggtggcatttagcatgagaaatgggagttgtttcccatcataggaaaatcaattttaactatta 183  Q
    |||| |||||||||||||||| ||||   |||||||||| |||||||||||| ||||||||||| ||||    
T  37563085 acataggtggcatttagcatgggaaagaagagttgtttctcatcataggaaagtcaattttaaccatta 37563017  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 37562302 - 37562397
Alignment:
Q  127 tttagcatgagaaatgggagttgtttcccatcataggaaaatcaattttaactattagatctacaatcttatcatacactcttaacactatatttt 222  Q
    ||||||||| |||| | || |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  37562302 tttagcatgggaaaggagaattgtttcccaccataggaaagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttt 37562397  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 13935101 - 13934999
Alignment:
Q  120 ggtggcatttagcatgagaaatgggagttgtttcccatcataggaaaatcaattttaactattagatctacaatcttatcatacactcttaacactatat 219  Q
    |||||||||||||||| |||| |  |||||||| ||| ||||||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  13935101 ggtggcatttagcatgggaaaggaaagttgttttccaccataggaaagtcacttttaaccattagatctacaatcttgtcatacactctcaacactatat 13935002  T
Q  220 ttt 222  Q
    |||    
T  13935001 ttt 13934999  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 51420860 - 51420963
Alignment:
Q  119 cggtggcatttagcatgagaaatgggagttgtttcccatcataggaaaatcaattttaactattagatctacaatcttatcatacactcttaacactata 218  Q
    ||||||||||||||||| |||| || |||||||| ||| ||||||||| ||| ||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  51420860 cggtggcatttagcatgggaaaaggaagttgttttccaccataggaaagtcatttttaaccattagatctacaatcttgtcatacactctcaacactata 51420959  T
Q  219 tttt 222  Q
    ||||    
T  51420960 tttt 51420963  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 51421716 - 51421621
Alignment:
Q  127 tttagcatgagaaatgggagttgtttcccatcataggaaaatcaattttaactattagatctacaatcttatcatacactcttaacactatatttt 222  Q
    |||||||||||||| |||| |||||||||| ||| ||||| ||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||    
T  51421716 tttagcatgagaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattaaatctacaatcttatcatacactctcaacactatatttt 51421621  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 38931321 - 38931416
Alignment:
Q  127 tttagcatgagaaatgggagttgtttcccatcataggaaaatcaattttaactattagatctacaatcttatcatacactcttaacactatatttt 222  Q
    |||||||||||||| |||| |||||||||| ||| ||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||    
T  38931321 tttagcatgagaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattagatctacaatcttatcatacactctcaacactatatttt 38931416  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 38932176 - 38932074
Alignment:
Q  120 ggtggcatttagcatgagaaatgggagttgtttcccatcataggaaaatcaattttaactattagatctacaatcttatcatacactcttaacactatat 219  Q
    |||||||||||||||| |||| || |||||||| ||| ||||||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  38932176 ggtggcatttagcatgggaaaaggaagttgttttccaccataggaaagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatat 38932077  T
Q  220 ttt 222  Q
    |||    
T  38932076 ttt 38932074  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 47334949 - 47334902
Alignment:
Q  119 cggtggcatttagcatgagaaatgggagttgtttcccatcataggaaa 166  Q
    ||||||||||||| ||| |||| ||||||||||||||| |||||||||    
T  47334949 cggtggcatttagtatgggaaaagggagttgtttcccaccataggaaa 47334902  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 40028830 - 40028764
Alignment:
Q  120 ggtggcatttagcatgagaaatgggagttgtttcccatcataggaaaatcaattttaactattagat 186  Q
    ||||||||||||||||||||  |  |||||||||||| ||||||||| | ||||||| | |||||||    
T  40028830 ggtggcatttagcatgagaatggatagttgtttcccaccataggaaagtaaattttatccattagat 40028764  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 7868189 - 7868122
Alignment:
Q  120 ggtggcatttagcatgagaaatgggagttgtttcccatcataggaaaatcaattttaactattagatc 187  Q
    ||||| ||||||||||||||| ||||||||||||||| ||| ||||| | ||||||||| | ||||||    
T  7868189 ggtgggatttagcatgagaaaggggagttgtttcccaccatgggaaagtaaattttaaccactagatc 7868122  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 5005462 - 5005508
Alignment:
Q  120 ggtggcatttagcatgagaaatgggagttgtttcccatcataggaaa 166  Q
    |||||||||||||||| |||| |||| |||||||||||||| |||||    
T  5005462 ggtggcatttagcatgggaaaggggaattgtttcccatcatgggaaa 5005508  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 36390964 - 36391024
Alignment:
Q  127 tttagcatgagaaatgggagttgtttcccatcataggaaaatcaattttaactattagatc 187  Q
    ||||||||| |||| || |||||||||||| ||| ||||| | ||||||||| ||||||||    
T  36390964 tttagcatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagatc 36391024  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 46759310 - 46759268
Alignment:
Q  120 ggtggcatttagcatgagaaatgggagttgtttcccatcatag 162  Q
    |||||||||||| ||| |||| |||||||||||||||||||||    
T  46759310 ggtggcatttagtatgggaaaggggagttgtttcccatcatag 46759268  T

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