View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9482_low_7 (Length: 236)

Name: NF9482_low_7
Description: NF9482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9482_low_7
NF9482_low_7
[»] chr7 (14 HSPs)
chr7 (16-236)||(321815-322035)
chr7 (20-168)||(1012172-1012321)
chr7 (137-236)||(23839292-23839390)
chr7 (137-236)||(28369273-28369372)
chr7 (137-232)||(38609281-38609377)
chr7 (137-234)||(5578953-5579054)
chr7 (137-222)||(3120817-3120903)
chr7 (146-222)||(22797523-22797598)
chr7 (138-236)||(7932285-7932380)
chr7 (137-232)||(39894794-39894885)
chr7 (137-170)||(7553534-7553567)
chr7 (141-183)||(29907213-29907255)
chr7 (200-236)||(1011469-1011505)
chr7 (196-236)||(1012327-1012367)
[»] chr5 (9 HSPs)
chr5 (26-236)||(4446268-4446480)
chr5 (140-236)||(7518858-7518954)
chr5 (137-234)||(27828404-27828501)
chr5 (137-236)||(43432165-43432264)
chr5 (158-236)||(27827594-27827672)
chr5 (137-220)||(23498381-23498464)
chr5 (181-236)||(4445511-4445565)
chr5 (177-236)||(27827446-27827505)
chr5 (89-147)||(22160463-22160523)
[»] chr4 (17 HSPs)
chr4 (29-236)||(37078880-37079088)
chr4 (79-236)||(47442098-47442255)
chr4 (137-236)||(39437173-39437271)
chr4 (137-233)||(41223928-41224024)
chr4 (137-219)||(37078261-37078342)
chr4 (137-231)||(28501913-28502004)
chr4 (137-236)||(49529487-49529583)
chr4 (137-190)||(32476714-32476767)
chr4 (137-212)||(44897997-44898072)
chr4 (139-236)||(50848200-50848298)
chr4 (137-212)||(16184705-16184780)
chr4 (137-186)||(13188076-13188125)
chr4 (137-222)||(50853897-50853982)
chr4 (137-222)||(22383977-22384057)
chr4 (187-236)||(6848692-6848741)
chr4 (137-193)||(6678556-6678612)
chr4 (137-181)||(34249628-34249672)
[»] chr8 (13 HSPs)
chr8 (29-236)||(8472558-8472767)
chr8 (29-236)||(32593404-32593613)
chr8 (137-236)||(7066196-7066295)
chr8 (137-236)||(8471891-8471990)
chr8 (137-236)||(33493874-33493975)
chr8 (16-150)||(20075512-20075648)
chr8 (137-231)||(32690288-32690382)
chr8 (28-170)||(541744-541887)
chr8 (137-236)||(18471252-18471351)
chr8 (137-236)||(32051680-32051779)
chr8 (137-220)||(33085282-33085365)
chr8 (137-236)||(8194357-8194455)
chr8 (200-236)||(539489-539525)
[»] chr2 (15 HSPs)
chr2 (137-236)||(23220958-23221057)
chr2 (137-236)||(17625741-17625841)
chr2 (137-236)||(17670128-17670228)
chr2 (136-236)||(14931950-14932050)
chr2 (136-236)||(24201231-24201330)
chr2 (137-236)||(2007151-2007250)
chr2 (138-220)||(13220138-13220220)
chr2 (138-236)||(33896816-33896914)
chr2 (137-236)||(25432772-25432870)
chr2 (141-209)||(3304549-3304617)
chr2 (137-188)||(38500599-38500650)
chr2 (160-235)||(35942124-35942199)
chr2 (137-208)||(11493767-11493838)
chr2 (89-147)||(817067-817127)
chr2 (186-235)||(37469321-37469370)
[»] chr3 (8 HSPs)
chr3 (137-236)||(20269938-20270037)
chr3 (137-233)||(48596856-48596952)
chr3 (141-236)||(26218770-26218865)
chr3 (150-231)||(44399629-44399709)
chr3 (139-220)||(28767629-28767710)
chr3 (150-235)||(55242339-55242424)
chr3 (126-219)||(109637-109729)
chr3 (137-193)||(46143445-46143501)
[»] chr1 (8 HSPs)
chr1 (137-236)||(25104797-25104895)
chr1 (137-236)||(32754991-32755090)
chr1 (137-236)||(45395795-45395893)
chr1 (141-219)||(46859659-46859737)
chr1 (141-236)||(37827844-37827939)
chr1 (137-236)||(14613883-14613981)
chr1 (137-186)||(19972601-19972650)
chr1 (200-236)||(1908252-1908288)
[»] chr6 (3 HSPs)
chr6 (139-236)||(15869429-15869526)
chr6 (89-185)||(19314508-19314608)
chr6 (89-147)||(20592048-20592108)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 321815 - 322035
Alignment:
Q  16 atattcacatagatgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaattttgatttgttgtaacaagcttggtgcatgtcatgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  321815 atattcacatagatgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaattttgagttgttgtaacaagcttggtgcatgtcatgt 321914  T
Q  116 atgcttcagcttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  321915 atgcttcagcttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattca 322014  T
Q  216 acttcctgggttagtgcttac 236  Q
    |||||||||||||||||||||    
T  322015 acttcctgggttagtgcttac 322035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 1012172 - 1012321
Alignment:
Q  20 tcacatagatgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaattttgatttgttgtaacaagcttggtgcat--gtcatgtat 117  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| | || | ||| ||||||||||||||||||||||||||||||  |||||||||    
T  1012172 tcacatagatgattatcaatggtgcattctcttcccat-gatgatcactcgatggtgatttttgatttgttgtaacaagcttggtgcatatgtcatgtat 1012270  T
Q  118 gcttcagcttgaggagggatgttaaaattaagaatctttagatattccttt 168  Q
    ||| |||||||||||||| ||||||| |||||||||||||||||| |||||    
T  1012271 gctccagcttgaggaggggtgttaaagttaagaatctttagatatcccttt 1012321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 23839292 - 23839390
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||  ||| |||||||||||||| |||||||| || ||||||||||    
T  23839292 tgttaaagttaagaatctttagatattcctttgattatacaacttcctagattgatt-gtataactcctagagtatttaacttcctaggctagtgcttac 23839390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 28369273 - 28369372
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||   || ||||||||||||| ||||||||  || ||||||||||    
T  28369273 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgccattactcctagagtatacaacttccgaggctagtgcttac 28369372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 38609281 - 38609377
Alignment:
Q  137 tgttaaaattaagaatctttagatattcc-tttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgc 232  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||| |||| ||||||||||||| ||||||||| || ||||||    
T  38609281 tgttaaaattaagaatctttagatattccctttaattgtacaacttcctaaattgattgttattactcctagagtatacaacttcctaggctagtgc 38609377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 5578953 - 5579054
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatac----aacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgc 232  Q
    |||||||||||||||||||||||||||||||||| |  ||     |||||||||||||||| |||| ||| ||||||||| ||||||||| || ||||||    
T  5578953 tgttaaaattaagaatctttagatattcctttaattgaactgatgacttcctagattgattgttattacttctagagtatacaacttcctaggctagtgc 5579052  T
Q  233 tt 234  Q
    ||    
T  5579053 tt 5579054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 3120903 - 3120817
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcct-agagtattcaacttcct 222  Q
    |||||||| ||||||| ||||||||||||||||| | |||||||||||||||||||| | || |||| | ||||| |||||||||||    
T  3120903 tgttaaaagtaagaatatttagatattcctttaattgtacaacttcctagattgattgtcattactcttaagagtgttcaacttcct 3120817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 22797523 - 22797598
Alignment:
Q  146 taagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 222  Q
    ||||||||||||||||||| |||||   ||||||| |||||||||||| |||| || |||||||||| |||||||||    
T  22797523 taagaatctttagatattc-tttaatggtacaactccctagattgattgttattacccctagagtatacaacttcct 22797598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 7932285 - 7932380
Alignment:
Q  138 gttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||||||||| ||  |||||||||||||| | |||||||||||||||||||| | |  ||||||  ||||| ||||||||| || ||||||||||    
T  7932285 gttaaaattaagaa-ctacagatattcctttaattgtacaacttcctagattgattgtcactactcct--agtatacaacttcctaggctagtgcttac 7932380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 39894794 - 39894885
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgc 232  Q
    ||||||||||||||||||| |||||||||||||| | || ||||||||  ||||||| |||    | ||||||||| ||||||||| || ||||||    
T  39894794 tgttaaaattaagaatcttcagatattcctttaattgtataacttcctgcattgattgtta----ttctagagtatacaacttcctaggctagtgc 39894885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 7553534 - 7553567
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaa 170  Q
    ||||||||||||||||||||||||||||||||||    
T  7553534 tgttaaaattaagaatctttagatattcctttaa 7553567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 29907213 - 29907255
Alignment:
Q  141 aaaattaagaatctttagatattcctttaactatacaacttcc 183  Q
    |||||||| ||||||||||||||||||||| | ||||||||||    
T  29907213 aaaattaaaaatctttagatattcctttaattgtacaacttcc 29907255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 1011469 - 1011505
Alignment:
Q  200 actcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||||||||||||||||||| || ||||||||||    
T  1011469 actcctagagtattcaacttcctaggctagtgcttac 1011505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 1012327 - 1012367
Alignment:
Q  196 tatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||| ||||||||||||||||||||||| || ||||||||||    
T  1012327 tataactcctagagtattcaacttcctaggctagtgcttac 1012367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 4446268 - 4446480
Alignment:
Q  26 agatgattatcaatggtgcattctcttcccgttgatgatca-tttgacgttgaattttgatttgttgtaacaagcttggtgcat--gtcatgtatgcttc 122  Q
    |||||||||| |||||||| |||| |||||||||||||||| ||||| |  || ||||||||||||||||||||||||||||||  |||||||||||| |    
T  4446268 agatgattattaatggtgccttcttttcccgttgatgatcactttgatggcgacttttgatttgttgtaacaagcttggtgcatatgtcatgtatgctcc 4446367  T
Q  123 agcttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 222  Q
    ||||||||||||| ||||||| |||||||| ||||||||| ||||||| | ||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  4446368 agcttgaggaggggtgttaaagttaagaatatttagatatccctttaattgtacaacttcctagattgatt-gtataactcctagagtattcaacttcct 4446466  T
Q  223 gggttagtgcttac 236  Q
     || ||||||||||    
T  4446467 aggctagtgcttac 4446480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 7518858 - 7518954
Alignment:
Q  140 taaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||| ||||||||| || ||||||||||    
T  7518858 taaaattaagcatctttagatattcctttaactgtacaacttcctagattgactgttattactcctagagtatacaacttcctaggctagtgcttac 7518954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 27828501 - 27828404
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgctt 234  Q
    ||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||| |||| ||||||||| ||| ||||||||| || ||||||||    
T  27828501 tgttaaaattatgaatctttagatattcccttaattgtacaacttcctagattgattgttattactcctagaatatacaacttcctaggctagtgctt 27828404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 43432264 - 43432165
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||||||||||||||| | |||||||||||| | ||||||||| |||||||||| |||| | ||||| ||||| ||||||||| || ||||||||||    
T  43432264 tgttaaaattaagaatcttcatatattcctttaattgtacaacttcgtagattgattgttattattcctaaagtatgcaacttcctaggctagtgcttac 43432165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 27827672 - 27827594
Alignment:
Q  158 gatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||| |||| | ||||||||||||||||| || |||| ||||||||||||| ||||||||| || ||||||||||    
T  27827672 gatattcccttaattgtacaacttcctagattggttgttataactcctagagtatacaacttcctaggctagtgcttac 27827594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 23498464 - 23498381
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttc 220  Q
    |||| ||||||||||||||||||| ||||||||| | ||| ||||||||||||||||  ||| |||||| | |||| |||||||    
T  23498464 tgttgaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctggggtatacaacttc 23498381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 4445511 - 4445565
Alignment:
Q  181 tcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||||||||| | || ||||||||||||||||||||||| || ||||||||||    
T  4445511 tcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttac 4445565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 27827505 - 27827446
Alignment:
Q  177 aacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||||||||||||| || | || |||||||||| ||||||||| || ||||||||||    
T  27827505 aacttcctagattgattgttcttacacctagagtatacaacttcctaggctagtgcttac 27827446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 22160523 - 22160463
Alignment:
Q  89 ttgtaacaagcttggtgcatgt--catgtatgcttcagcttgaggagggatgttaaaatta 147  Q
    ||||||||||||||||| || |  ||||||||||||||||||||||||  ||||| |||||    
T  22160523 ttgtaacaagcttggtgtatatgacatgtatgcttcagcttgaggaggagtgttagaatta 22160463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 37078880 - 37079088
Alignment:
Q  29 tgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaattttgatttgttgtaacaagcttggtgcat--gtcatgtatgcttcagct 126  Q
    ||||||| || ||||||||||||||| |||||||||||||||| | ||| |||||||| |||||||||||||||||  ||  |||||||||||| |||||    
T  37078880 tgattattaacggtgcattctcttcctgttgatgatcatttgatggtgacttttgattagttgtaacaagcttggtttatatgtcatgtatgctacagct 37078979  T
Q  127 tgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggt 226  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||||| ||     
T  37078980 tgaggaggggtgttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgatt-gtataactcctagagtattcaacttcctaggc 37079078  T
Q  227 tagtgcttac 236  Q
    || |||||||    
T  37079079 tactgcttac 37079088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 47442255 - 47442098
Alignment:
Q  79 ttttgatttgttgtaacaagcttggtgcatgtcatgtatgcttcagcttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaa 178  Q
    ||||| ||||||||||||||||||| |||||||||||||| | |||||||||||| | ||||||||||||||||||||||  |||||||| | | || ||    
T  47442255 ttttgttttgttgtaacaagcttggagcatgtcatgtatgatccagcttgaggagcgctgttaaaattaagaatctttaggaattcctttcattctataa 47442156  T
Q  179 cttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||| |||||  |||| ||||||||||||| |||||| || |  ||||||||||    
T  47442155 cttcctagtttgatagttattactcctagagtatacaacttgctagtctagtgcttac 47442098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 39437173 - 39437271
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||| |||||||||||||||||| ||||||| | |||||||||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||    
T  39437173 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatt-ttataactcctagagtattcaacttcctaggctagtgcttac 39437271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 41223928 - 41224024
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgct 233  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||| ||||| ||||||| ||||||||| || |||||||    
T  41223928 tgttaaagttaagaatctttagatatgcctttaactgtacaacttcctagattgattgttattactccaagagtatacaacttcctaggctagtgct 41224024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 37078261 - 37078342
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaactt 219  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||    
T  37078261 tgttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgatt-gtataactcctagagtattcaactt 37078342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 28502004 - 28501913
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtg 231  Q
    ||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| | || |||||||   ||||||||||||| || |||||    
T  28502004 tgttaaagttaagaatctttagatattcctttaattgtacaacttcctagattgattgtaattactccta---tattcaacttcctaggctagtg 28501913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 49529487 - 49529583
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||| ||||||||||||||||   ||||||| | |||||||||||||||||||| | || ||||||||||||||||||||||| || ||||||||||    
T  49529487 tgttaaagttaagaatctttagatc--cctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtgcttac 49529583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 32476767 - 32476714
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattg 190  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  32476767 tgttaaaattaagaatctttagatattcctttaactttataacttcctagattg 32476714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 44898072 - 44897997
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtat 212  Q
    |||| |||||||||||||||| |||||||||||| | |||||||||| ||||||||| |||| ||||| |||||||    
T  44898072 tgttgaaattaagaatctttacatattcctttaattgtacaacttcccagattgattgttattactccaagagtat 44897997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 50848298 - 50848200
Alignment:
Q  139 ttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcact-cctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||| |||||||||||||||||||| ||||| ||| | ||||||||||||||||   || ||| || ||||||||||||||||| || ||||||||||    
T  50848298 ttaaagttaagaatctttagatattcgtttaattattctacttcctagattgattgcgattactcccaagagtattcaacttcctaggctagtgcttac 50848200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 16184705 - 16184780
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtat 212  Q
    |||||||| ||||||||||||||||||| ||||| | ||||||||||| || ||||| |||| | |||||||||||    
T  16184705 tgttaaaagtaagaatctttagatattcttttaattgtacaacttcctcgactgattgttattattcctagagtat 16184780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 13188076 - 13188125
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctag 186  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||||||    
T  13188076 tgttaaaattaagtatctttagatattcctttaattgtacaacttcctag 13188125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 50853897 - 50853982
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 222  Q
    |||||||||||||| |||| |||||||||||||| | |||||| | ||||||||||| |||| ||||| | | ||| |||||||||    
T  50853897 tgttaaaattaagattcttaagatattcctttaattgtacaacattctagattgattgttattactcccacaatatacaacttcct 50853982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 22383977 - 22384057
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcct 222  Q
    ||||||||||||||||||||||||||||||     | ||||||||| |||||||||| |||| | ||||| ||||| ||| |||||    
T  22383977 tgttaaaattaagaatctttagatattcct-----tgtacaacttcttagattgattgttattattcctatagtatacaatttcct 22384057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 6848741 - 6848692
Alignment:
Q  187 attgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||| |||| ||||||||||||| ||||||||| || ||||||||||    
T  6848741 attgattgttattactcctagagtatacaacttcctaggctagtgcttac 6848692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 6678556 - 6678612
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgatt 193  Q
    ||||||||||||||||||||  ||||| |||||| | || ||||| |||||||||||    
T  6678556 tgttaaaattaagaatctttcaatatttctttaattgtataactttctagattgatt 6678612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 34249672 - 34249628
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaactt 181  Q
    ||||||||||||||||| |||||||||||| ||| | ||||||||    
T  34249672 tgttaaaattaagaatccttagatattcctataattgtacaactt 34249628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 8472558 - 8472767
Alignment:
Q  29 tgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaattttgatttgttgtaacaagcttggtgcat--gtcatgtatgcttcagct 126  Q
    ||||||| || |||||||| ||| ||  ||||||||||||||| | ||| |||||||| |||||||||||||||||||||  |||||||||||| |||||    
T  8472558 tgattattaacggtgcattttctaccttttgatgatcatttgatggtgacttttgattagttgtaacaagcttggtgcatatgtcatgtatgctccagct 8472657  T
Q  127 tgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggt 226  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||| | ||||||||||||||||| || |||| ||||| ||||||||||||||| | ||     
T  8472658 tgaggaggggtgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattggttgttattactccaagagtattcaacttcttaggc 8472757  T
Q  227 tagtgcttac 236  Q
    ||||||||||    
T  8472758 tagtgcttac 8472767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 32593404 - 32593613
Alignment:
Q  29 tgattatcaatggtgcattctcttcccgttgatgatcatttgacgttgaattttgatttgttgtaacaagcttggtgca--tgtcatgtatgcttcagct 126  Q
    ||||||| |||||||| |||||||||| |||||||||| |||| | ||| || || ||| |||||||||||||||||||  ||||||| ||| | |||||    
T  32593404 tgattattaatggtgccttctcttcccattgatgatcacttgatggtgacttgtgttttcttgtaacaagcttggtgcacatgtcatgcatgttccagct 32593503  T
Q  127 tgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggt 226  Q
    ||||||| | |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||   ||||||||||||| ||||||||| ||     
T  32593504 tgaggagaggtgttaaaattaagaatctatagatattcctttaattgtacaacttcctagattgattgttcctactcctagagtatacaacttcctaggc 32593603  T
Q  227 tagtgcttac 236  Q
    ||||||||||    
T  32593604 tagtgcttac 32593613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 7066295 - 7066196
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || | ||||||||||||||||||||||| || ||||||||||    
T  7066295 tgttaaagttaagaatctttagatattcctttaattatacaacttcctagattgattgttgttactcctagagtattcaacttcctaggctagtgcttac 7066196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 8471891 - 8471990
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||| |||||||||||||||||| ||||||| | |||||||||||||||||||| |||| |||| |||||||||||||| ||| || ||||||||||    
T  8471891 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattgttattactcgtagagtattcaactccctaggctagtgcttac 8471990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 33493975 - 33493874
Alignment:
Q  137 tgttaaaattaagaatctttagatat--tcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgctt 234  Q
    ||||||||||||||||||||||||||  |||||||| | |||||||||||||||||| | |||| |||||||||||||||||||| || || ||||||||    
T  33493975 tgttaaaattaagaatctttagatatattcctttaattctacaacttcctagattgagtgttattactcctagagtattcaactttctaggctagtgctt 33493876  T
Q  235 ac 236  Q
    ||    
T  33493875 ac 33493874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 20075512 - 20075648
Alignment:
Q  16 atattcacatagatgattatcaatggtgcattctcttcccgttgatgatcat-ttgacgttgaattttgatttgttgtaacaagcttggtgc--atgtca 112  Q
    |||||| || |||||||||| |||||||| ||||||||| |||||||||||| |||| | ||| ||||| ||||||||||||||||  ||||  ||||||    
T  20075512 atattcccacagatgattattaatggtgccttctcttccggttgatgatcatcttgatggtgacttttgttttgttgtaacaagctgtgtgcatatgtca 20075611  T
Q  113 tgtatgcttcagcttgaggagggatgttaaaattaaga 150  Q
    |||||||| |||||||||| ||| | ||||||||||||    
T  20075612 tgtatgctccagcttgagg-ggggtattaaaattaaga 20075648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 32690382 - 32690288
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtg 231  Q
    ||||||||||||||||||||||| |||||||||| | || |||||||||| |||||| |||| ||||||||||||| ||||||||| || |||||    
T  32690382 tgttaaaattaagaatctttagacattcctttaattgtataacttcctaggttgattgttattactcctagagtatacaacttcctaggctagtg 32690288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 541887 - 541744
Alignment:
Q  28 atgattatcaatggtgcattctcttcccgttgatgatcat-ttgacgttgaattttgatttgttgtaacaagcttggtgc--atgtcatgtatgcttcag 124  Q
    |||||| | |||||| | |||||| | | ||||||||||| |||| | ||| ||||| ||||||||||||||||||||||  ||||||  |||||| |||    
T  541887 atgatttttaatggtcctttctctactcattgatgatcatcttgatggtgacttttgttttgttgtaacaagcttggtgcttatgtcagatatgctccag 541788  T
Q  125 cttgaggagggatgttaaaattaagaatctttagatattcctttaa 170  Q
    ||||||||||| |||||||||||||||   ||||||||||||||||    
T  541787 cttgaggaggggtgttaaaattaagaa--cttagatattcctttaa 541744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 18471351 - 18471252
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||| |||| |||||||| || ||||||||| | |||||||||||||||||||| |||| ||| ||| ||||| ||||||||| || ||||||||||    
T  18471351 tgttaaagttaacaatctttacatgttcctttaattgtacaacttcctagattgattgttattacttctaaagtatacaacttcctagggtagtgcttac 18471252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 32051779 - 32051680
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||||||||||||||| ||||||||||||   |||||||||  ||||||||||| |||| |||| |||| ||| ||||||||| || ||||||||||    
T  32051779 tgttaaaattaagaatcttcagatattcctttggttatacaactctctagattgatttttattactcttagactatacaacttcctaggctagtgcttac 32051680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 33085282 - 33085365
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttc 220  Q
    |||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||  ||| |||||||| |||| |||||||    
T  33085282 tgttaaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctagggtatacaacttc 33085365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 8194357 - 8194455
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||| |||||| ||||||| ||||| ||||| | ||| |||||||||||||||| |||| |||||| |||||||| ||||||| || ||||||||||    
T  8194357 tgttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtgcttac 8194455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 539525 - 539489
Alignment:
Q  200 actcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||||||||||||||||||| || ||||||||||    
T  539525 actcctagagtattcaacttcctaggctagtgcttac 539489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 23220958 - 23221057
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  ||| |||||||||||||||||||||||  | ||||||||||    
T  23220958 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgatattactcctagagtattcaacttcctatgctagtgcttac 23221057  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 17625741 - 17625841
Alignment:
Q  137 tgttaaaa-ttaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgctta 235  Q
    |||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| || |||||||||    
T  17625741 tgttaaaagttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggctagtgctta 17625840  T
Q  236 c 236  Q
    |    
T  17625841 c 17625841  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 17670128 - 17670228
Alignment:
Q  137 tgttaaaa-ttaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgctta 235  Q
    |||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| || |||||||||    
T  17670128 tgttaaaagttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggctagtgctta 17670227  T
Q  236 c 236  Q
    |    
T  17670228 c 17670228  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 14932050 - 14931950
Alignment:
Q  136 atgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgctta 235  Q
    |||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||| |||| ||||||||||||| || |||||| || |||||||||    
T  14932050 atgttaaaattaagaatctttagatatttctttaattgtacaacttcctaggttgatttttattactcctagagtatacatcttcctaggctagtgctta 14931951  T
Q  236 c 236  Q
    |    
T  14931950 c 14931950  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 24201231 - 24201330
Alignment:
Q  136 atgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgctta 235  Q
    |||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||||  ||| ||||||||||||||||||||||| || |||||||||    
T  24201231 atgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatt-gtataactcctagagtattcaacttcctaggctagtgctta 24201329  T

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Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 2007250 - 2007151
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||||| ||||| ||| ||||| || || |||||||    
T  2007250 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttattactcctatagtatacaatttcctaggctaatgcttac 2007151  T

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Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 13220220 - 13220138
Alignment:
Q  138 gttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttc 220  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||| || ||| |||| ||||||||||||| |||||||    
T  13220220 gttaaaattaagaatctttagatattcctttaattgtacaacttcctagtttaattgttattactcctagagtatacaacttc 13220138  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 33896914 - 33896816
Alignment:
Q  138 gttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||||||||||||| ||||||||||||||| | |||| |||||||||||||||||| | ||| ||||||||| | ||||| | || ||||||||||    
T  33896914 gttaaaattaagaatctctagatattcctttaattgtacagcttcctagattgattatttttactgctagagtatactacttcttaggctagtgcttac 33896816  T

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Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 25432870 - 25432772
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||||||| || ||||| || ||||||||| | |||||||||||||||||||| |||| ||||||||||||| ||| ||||| || ||||||||||    
T  25432870 tgttaaaattaaaaa-ctttatatgttcctttaattgtacaacttcctagattgattgttattactcctagagtatacaatttcctaggctagtgcttac 25432772  T

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Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 3304549 - 3304617
Alignment:
Q  141 aaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagag 209  Q
    ||||||| ||||||| |||||||||||||| | |||||||||||||||||||| |||| ||||||||||    
T  3304549 aaaattaggaatcttcagatattcctttaattgtacaacttcctagattgattgttattactcctagag 3304617  T

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Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 38500599 - 38500650
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagat 188  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  38500599 tgttaaaattaagaatctttagatattcctttaattgtacaacttcctagat 38500650  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 35942199 - 35942124
Alignment:
Q  160 tattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgctta 235  Q
    ||||| ||| |||||||||||||||||||||||| |||| | ||||||||||  ||||||||| |||||| |||||    
T  35942199 tattcttttcactatacaacttcctagattgattgttattattcctagagtaaacaacttcctaggttagggctta 35942124  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 11493767 - 11493838
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctaga 208  Q
    ||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||  || |||| |||||||||    
T  11493767 tgttaaaattaagaatcttaagaaattactttaattgtacaacttcctagatttgttgttattactcctaga 11493838  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 817127 - 817067
Alignment:
Q  89 ttgtaacaagcttggtgcatgt--catgtatgcttcagcttgaggagggatgttaaaatta 147  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||  ||||| |||||    
T  817127 ttgtaacaagcttggtgcatatgacatgtatgcttcagcttgaggaggagtgttagaatta 817067  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 37469370 - 37469321
Alignment:
Q  186 gattgattattatcactcctagagtattcaacttcctgggttagtgctta 235  Q
    |||||||| |||| ||||||||||||| ||||||||| || |||||||||    
T  37469370 gattgattgttattactcctagagtatacaacttcctaggctagtgctta 37469321  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 20270037 - 20269938
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |||| ||||||| | ||| ||||||||| |||||||||||||    
T  20270037 tgttaaaattaagaatctttagatattcctttaattgtacaatttcctagattgattgttattactcctacactatacaacttcctaggttagtgcttac 20269938  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 48596952 - 48596856
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgct 233  Q
    |||||||||||||||| ||||||||||||||||| | || ||||||||||||||||| |||| |||||||||||||  |||||||| ||||||||||    
T  48596952 tgttaaaattaagaatttttagatattcctttaattttataacttcctagattgattgttattactcctagagtataaaacttccttggttagtgct 48596856  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 26218770 - 26218865
Alignment:
Q  141 aaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||||||||||||||||||||||||| | || |||||| |||||||||| |||| | ||||||| ||| |||| |||| |||||||||||||    
T  26218770 aaaattaagaatctttagatattcctttaattgtataacttcatagattgattgttattattcctagaatatacaacatcctaggttagtgcttac 26218865  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 44399709 - 44399629
Alignment:
Q  150 aatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtg 231  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| ||||   | ||||||||| ||||||||||||||||||    
T  44399709 aatctgtagatattcctttaattatacaacttcctagattgattgttat-ttttctagagtatacaacttcctgggttagtg 44399629  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 28767710 - 28767629
Alignment:
Q  139 ttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttc 220  Q
    |||||||||| |||||||| |||||| ||||| | |||||||||||||||||||| |||| ||  ||||||||| |||||||    
T  28767710 ttaaaattaaaaatctttaaatattcatttaattgtacaacttcctagattgattgttattacaactagagtatacaacttc 28767629  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 55242339 - 55242424
Alignment:
Q  150 aatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgctta 235  Q
    ||||| ||| ||||||||||| | |||||||||||||||||||| |||  |  |||||||||| ||||||||| ||||||||||||    
T  55242339 aatctgtagttattcctttaaatgtacaacttcctagattgattgttaatatccctagagtatacaacttcctaggttagtgctta 55242424  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 109729 - 109637
Alignment:
Q  126 ttgaggagggatgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaactt 219  Q
    |||||||||| ||||||  |||| |||||||||||||| |||||| | |||||||| ||||||||||| |||| ||| || | |||| ||||||    
T  109729 ttgaggaggggtgttaag-ttaaaaatctttagatattactttaattgtacaactttctagattgattgttattacttctcgcgtatacaactt 109637  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 46143445 - 46143501
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgatt 193  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||  ||||| |||||    
T  46143445 tgttaaatttaagaatcgttagatattcctttaattatacaactctctagactgatt 46143501  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 25104895 - 25104797
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||    
T  25104895 tgttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatta-tataactcctagagtattcaacttcctaggctagtgcttac 25104797  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 32755090 - 32754991
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||||||||||||||| |||||||||| ||| | || ||||||||||||||||| |||| ||||||||||||| ||||||||| || ||||||||||    
T  32755090 tgttaaaattaagaatcttcagatattcctctaattgtaaaacttcctagattgattgttattactcctagagtatacaacttccttgggtagtgcttac 32754991  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 45395795 - 45395893
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||| |||||||||||||||||| ||||||| | ||| ||||||||||||||||  ||| ||||||||||||||||||||||| || ||||||||||    
T  45395795 tgttaaagttaagaatctttagatatccctttaattgtacgacttcctagattgatt-gtataactcctagagtattcaacttcctaggctagtgcttac 45395893  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 46859737 - 46859659
Alignment:
Q  141 aaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaactt 219  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||| || | ||||||||||||| ||||||    
T  46859737 aaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttgttactcctagagtatacaactt 46859659  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 37827844 - 37827939
Alignment:
Q  141 aaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||| |||| |||| ||||||| | ||| ||||||||| || ||||||||||    
T  37827844 aaaattaagaatctttagatattcatttaattgtacaacttcctagatcgattgttattactcctacaatatacaacttcctaggctagtgcttac 37827939  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 14613883 - 14613981
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||| |||||||||||||||||| ||||||| | ||||||||  ||||||||||  ||| |||||||||||||||||||| || || | ||||||||    
T  14613883 tgttaaagttaagaatctttagatatccctttaattgtacaactttttagattgatt-gtataactcctagagtattcaactttctaggctggtgcttac 14613981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 19972650 - 19972601
Alignment:
Q  137 tgttaaaattaagaatctttagatattcctttaactatacaacttcctag 186  Q
    ||||||||||||||||||| ||| |||||||||| | |||||||||||||    
T  19972650 tgttaaaattaagaatcttcagaaattcctttaattgtacaacttcctag 19972601  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 1908252 - 1908288
Alignment:
Q  200 actcctagagtattcaacttcctgggttagtgcttac 236  Q
    ||||||||||||||||||||||| || ||||||||||    
T  1908252 actcctagagtattcaacttcctaggctagtgcttac 1908288  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 15869526 - 15869429
Alignment:
Q  139 ttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttcctgggttagtgcttac 236  Q
    |||||||||||||||||||||||||||||| |   ||||||| |||||||||||| |||| ||||||||||||| ||||||| | || ||||||||||    
T  15869526 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgcttac 15869429  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 19314508 - 19314608
Alignment:
Q  89 ttgtaacaagcttggtgcatgt--catgtatgcttcagcttgaggagggatgttaaaattaag--aatctttagatattcctttaactatacaacttcct 184  Q
    |||| ||||||||||||||| |  || ||||||| |||||||||||||  ||||| |||||||  |||||||  | |||||||||| | |||||||||||    
T  19314508 ttgttacaagcttggtgcatatgacaagtatgctccagcttgaggaggagtgttagaattaagtaaatctttcaaaattcctttaattgtacaacttcct 19314607  T
Q  185 a 185  Q
    |    
T  19314608 a 19314608  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 20592108 - 20592048
Alignment:
Q  89 ttgtaacaagcttggtgcatgt--catgtatgcttcagcttgaggagggatgttaaaatta 147  Q
    |||||||||||||||||||| |  |||||||||| |||||||||||||  ||||| |||||    
T  20592108 ttgtaacaagcttggtgcatatgacatgtatgctccagcttgaggaggagtgttagaatta 20592048  T

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