View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9483_high_2 (Length: 608)
Name: NF9483_high_2
Description: NF9483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9483_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 2056009 - 2056323
Alignment:
| Q |
18 |
ctttgaacaacaacctaaaagccatcatagaaaatataatatatgaatccactagaactattgtacttatgaaaaacagtctttataattttagaataaa |
117 |
Q |
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| T |
2056009 |
ctttgaacaacaacctaaaagccatcatagaaaatataatatatgaatccattagaactattgtacttatgaaaaacagtcttgataattttagaataaa |
2056108 |
T |
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| Q |
118 |
tcattagnnnnnnnnnnnnnnngaagataatcatacaggttgaagaagattccctagtcactatttcgtttgcattaggtaaaaaagacaagcatgttca |
217 |
Q |
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| T |
2056109 |
tcattagttttttctttt----gaagataaccatacaggtttaaaaagattccctagtcactatttcttttgcattaggtaaaaaagacaagcatgttca |
2056204 |
T |
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| Q |
218 |
tatttactttctccatgctttaattatcatatcatccaagggtcaagtaaatagacataatacatataagaatagatatgttactgttacttacagtaaa |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2056205 |
tatttactttcttcatgctttaattatcatatcatccaagggtcaagtaaatagacataatacatataagaatagatatgttactgttacttacagtaaa |
2056304 |
T |
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| Q |
318 |
gtgtaatcaatttgacagc |
336 |
Q |
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| T |
2056305 |
ttgtaatcaatttgacagc |
2056323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 402 - 597
Target Start/End: Original strand, 2056389 - 2056575
Alignment:
| Q |
402 |
aagttgtttagaactcaagtctgccgcaccggaacaaacttagtaaaaggtgtaccggaacagtagccccctttaggctatggggctaaaaggcctatca |
501 |
Q |
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| T |
2056389 |
aagttgtttagaactcaagtctgccgcaccggaacaaacttagtaaaaggtgtaccggaacagtagccccctttaggcta---------aaggcctatca |
2056479 |
T |
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| Q |
502 |
accatcgcatgtggcttatgtccttattgtagtttcaatgttttgacctcaaatcttagacaccgcttttctaaggtattgtccgcattgagtatt |
597 |
Q |
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| T |
2056480 |
accatcgcatgtggcttatgtccttattgtagtttcaatgttttgacctcaaatcttagacaccgcttttctaaggtattgtccgcattgagtatt |
2056575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 44379653 - 44379717
Alignment:
| Q |
18 |
ctttgaacaacaacctaaaagcc-atcatagaaaatataatatatgaatccactagaactattgt |
81 |
Q |
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| T |
44379653 |
ctttgaacgacaatctaaatgcccatcatagaaaatataatatgtgaatcaaatagaactattgt |
44379717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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