View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9483_high_21 (Length: 229)
Name: NF9483_high_21
Description: NF9483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9483_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3402585 - 3402807
Alignment:
| Q |
1 |
tcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaatcatcttagatgcatttgttgattctagatctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3402585 |
tcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaatcatcttagatgcatttgttgattctagatctt |
3402684 |
T |
|
| Q |
101 |
ctggagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3402685 |
ctggagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatg |
3402784 |
T |
|
| Q |
201 |
gcacacaagctacaccaatataa |
223 |
Q |
| |
|
|||||||||||||| |||||||| |
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|
| T |
3402785 |
gcacacaagctacaacaatataa |
3402807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3389298 - 3389511
Alignment:
| Q |
1 |
tcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaatcatcttagatgcatttgttgattctagatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3389298 |
tcaaattcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaatcatcttagatgcatttgttgattctagatctt |
3389397 |
T |
|
| Q |
101 |
ctggagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3389398 |
ctggagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatg |
3389497 |
T |
|
| Q |
201 |
gcacacaagctaca |
214 |
Q |
| |
|
| |||||||||||| |
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|
| T |
3389498 |
gaacacaagctaca |
3389511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 3369326 - 3369544
Alignment:
| Q |
5 |
attcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaatcatcttagatgcatttgttgattctagatcttctgg |
104 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||||||||| |||| ||||||||||||| |
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| T |
3369326 |
attcttttggagttctttccttaccaccagctgtgataaacatgatgttgtcaacagttgaaaccatcttagatgcattctctgatcctagatcttctgg |
3369425 |
T |
|
| Q |
105 |
agatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggcac |
204 |
Q |
| |
|
| || ||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||| |
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|
| T |
3369426 |
tggtaagaactccacaataataaccttaccatttagaggcaaagctttgtgacaattccttaaaatttctaagcatttttcatctggccaattatggcac |
3369525 |
T |
|
| Q |
205 |
acaagctacaccaatataa |
223 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
3369526 |
acaagctacaaaaatataa |
3369544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 3297816 - 3298012
Alignment:
| Q |
7 |
tcttttgaagttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaatcatcttagatgcatttgttgattctagatcttctggag |
106 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| |||||||| | |||||||||||| | |||||||||||||| |||| |||||||||| |
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|
| T |
3297816 |
tcttttggagttctttcctttccaccagctgtgataaacatgatgttatcgagaattgaaatcatttgagatgcatttgttggttctggatcttctggtt |
3297915 |
T |
|
| Q |
107 |
atatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggca |
203 |
Q |
| |
|
| ||| || | | ||| ||||| ||||||| ||| |||||||||| ||||||| |||| |||||| |||||||||||||||||| || ||||| |
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|
| T |
3297916 |
gtgtgagctctatgagaataacctttccatttggaggtaaagctttgtaacaattgcttaagatttctatgcatttttcatccgaccagttgtggca |
3298012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 3348122 - 3348207
Alignment:
| Q |
115 |
tccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatg |
200 |
Q |
| |
|
||||||| ||| ||||| |||||| |||||||||||||| ||||||| | || |||||| |||||||||||||||||||||||| |
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|
| T |
3348122 |
tccacaagaatcacctttccattttgaggcaaagctttgtaacaattgctaaatatttctatgcatttttcatccgaccaattatg |
3348207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 3359176 - 3359263
Alignment:
| Q |
17 |
ttctttccttaccaccagctgtgataaacatcatgttatcaacaattgaaa-tcatcttagatgcatttgttgattctagatcttctgg |
104 |
Q |
| |
|
|||||||| | ||||||||||||| |||||||||||||||| ||||||||| |||| ||||| ||||||||| |||| |||||||||| |
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|
| T |
3359176 |
ttctttccattccaccagctgtgacaaacatcatgttatcagcaattgaaagccatc-tagatacatttgttggttcttgatcttctgg |
3359263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 43365638 - 43365532
Alignment:
| Q |
97 |
tcttctggagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaat |
196 |
Q |
| |
|
|||||||| ||||||| ||||||||||| || || ||||||| | | |||||||||||||||| ||||| ||||| |||||||||||||||||||| |
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|
| T |
43365638 |
tcttctggcaatatgaactccacaataatcacttttccatttggtgatagagctttgtgacaattgcttaaaaattctatgcatttttcatccgaccaat |
43365539 |
T |
|
| Q |
197 |
tatggca |
203 |
Q |
| |
|
||||||| |
|
|
| T |
43365538 |
tatggca |
43365532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 23994463 - 23994381
Alignment:
| Q |
121 |
ataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggca |
203 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||||| ||||| ||| || ||||| |||||||||||| |||||||| |
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|
| T |
23994463 |
ataatgaccttcccatttggtggtaaagctttgtgacaattgcttaaaatttgtatgcattgttcatccgaccagttatggca |
23994381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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