View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9483_low_11 (Length: 463)
Name: NF9483_low_11
Description: NF9483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9483_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Complemental strand, 16463023 - 16462593
Alignment:
| Q |
17 |
gttccttctcaataagtatcatccccatggctcccgcatcttgtaaaattagcttcttcattttgcgtgtaagattttgatcatcgttagcacaaataac |
116 |
Q |
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| T |
16463023 |
gttccttctcaataagtatcatccccatggctcccgcatcttgtaaaattagcttcttcattttgcgtgtaagattttgatcatcgttagcacaaataac |
16462924 |
T |
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| Q |
117 |
aatctttcctgcaacttttttgttatctagtgatctaggataacagttcctgcattttagaaaacattttcacacttttcttacatcttctgtcaactag |
216 |
Q |
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| T |
16462923 |
aatctttcctgcaacttttttgttatctagtgatccaggataacagttcctgcattttagaaaacattttcacacttttcttactgcttctgtcaactag |
16462824 |
T |
|
| Q |
217 |
tattagaagcttactataactatgtgtcatgtgtgtgtacatatatatgctgctggtgttaatgccataaaactaactggtatgtattttatgtactact |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16462823 |
tattagaagcttactataaccatgtgtcatgtgtgtgtacatatatatgctgctggtgttaatgccataaaattaactggtatgtattttatgtactact |
16462724 |
T |
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| Q |
317 |
aatatttaccaacaacaaaagcaatattgaatttgaatatatatctcatttgagttgagctatgaaatgataactaagttattttaggcttaaaaagtat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16462723 |
aatatttaccaacaacaaaagcaatattgaatttgaatatatatctcatttgagttgagctatgaaatgataactaagttattttaggcttaaaaagtat |
16462624 |
T |
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| Q |
417 |
gaccgtaacatgataagaacaattagtatca |
447 |
Q |
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||| ||||||||||||||||||||||||||| |
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| T |
16462623 |
gacagtaacatgataagaacaattagtatca |
16462593 |
T |
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